LXL04_018995 | RubberDandelionOmics

Gene overview

LXL04_018995

Reference: OH-1004 Chr: Chr04 Coordinates: 21297987-21303523 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1449 bp · LXL04_018995|LXL04_018995|OH1004|cDNA

ATGGTTGGGAGTCGCCAAAACCAGCATCACCTAAAAAGAGGATTTGTTCGCCGCAATTCTTGTTTAACCGTAGAaaaaataaaaagaaagaaagaaaagagaaaGCTAATAAAGAAAGGAGAGAAAGAAGGGAATACAAAGACAAAAAAAGGTTCTCAATACCCCATCATTCAAAACCACactcctctctctctctatctctaCTTAATCAAGTATTGGAAGACCTCTCAAAGTTTCTACAAAGACGGGAGTGTTAGCTT...

CDS

Download CDS FASTA

1449 bp · LXL04_018995|LXL04_018995|OH1004|CDS

ATGGTTGGGAGTCGCCAAAACCAGCATCACCTAAAAAGAGGATTTGTTCGCCGCAATTCTTGTTTAACCGTAGAAAAAATAAAAAGAAAGAAAGAAAAGAGAAAGCTAATAAAGAAAGGAGAGAAAGAAGGGAATACAAAGACAAAAAAAGGTTCTCAATACCCCATCATTCAAAACCACACTCCTCTCTCTCTCTATCTCTACTTAATCAAGTATTGGAAGACCTCTCAAAGTTTCTACAAAGACGGGAGTGTTAGCTT...

Protein

Download Protein FASTA

482 aa · LXL04_018995|LXL04_018995|OH1004|PROTEIN

MVGSRQNQHHLKRGFVRRNSCLTVEKIKRKKEKRKLIKKGEKEGNTKTKKGSQYPIIQNHTPLSLYLYLIKYWKTSQSFYKDGSVSLGEIQEKKTHLRAIDRVREKNKSSPVQQMLAGGPNNWWSMMATTRPSPSPPPPQSPFFSASAQPHFFPHQYAPPPPPPPPPLSLSPWHDNHHQDFPDSLSQLLMSGLVGEDDKSTLSHMQQAVKKLENWEQQLLHDHHHQQQHHHHHHQNTNSMVESGVKQENPLSYGSSYGHG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018995`
TK1151 ID	TkA05G008660
OH-1004 ID	LXL04_018995
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 82.461 / OH-1004 65.353 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_018995

Location Chr04:21297987-21303523 (-)

Description Similar to BHLH68: Transcription factor bHLH68

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g29100`	Transcription factor bHLH68.	No verified direct reference in this release
`At2g20100`	Transcription factor bHLH133.	No verified direct reference in this release
`At1g27660`	Transcription factor bHLH110.	No verified direct reference in this release
`At3g19500`	Transcription factor bHLH113.	No verified direct reference in this release
`At3g20640`	Transcription factor bHLH123.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018995 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0005634 nucleus Cellular Component

GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding Molecular Function

GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0046983 protein dimerization activity Molecular Function

KEGG gene cross-reference

ath:AT1G27660

ath:AT2G20100

ath:AT3G19500

ath:AT3G20640

ath:AT4G29100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.979

Rank 1 · LXL04_018995 · OH-1004

Cytoplasm0.071

Rank 2 · LXL04_018995 · OH-1004

Cell membrane0.028

Rank 3 · LXL04_018995 · OH-1004

Endoplasmic reticulum0.022

Rank 4 · LXL04_018995 · OH-1004

Plastid0.010

Rank 5 · LXL04_018995 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF27761.2VUP_C447-460 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018995	`PF27761.2`	VUP_C	447	460	3.1e-06	27.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8S3D1`	Arabidopsis thaliana	Transcription factor bHLH68	45.023%	Swiss-Prot	moderate database homology
`Q7XHI5`	Arabidopsis thaliana	Transcription factor bHLH133	67.836%	Swiss-Prot	weak database homology
`Q9SFZ3`	Arabidopsis thaliana	Transcription factor bHLH110	51.799%	Swiss-Prot	weak database homology
`Q9LT67`	Arabidopsis thaliana	Transcription factor bHLH113	47.368%	Swiss-Prot	weak database homology
`Q8GXT3`	Arabidopsis thaliana	Transcription factor bHLH123	44.828%	Swiss-Prot	weak database homology

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