LXL04_018983 | RubberDandelionOmics

Gene overview

LXL04_018983

Reference: OH-1004 Chr: Chr04 Coordinates: 20978643-20981424 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2028 bp · LXL04_018983|LXL04_018983|OH1004|cDNA

ATGTCTTCTCCACCGCCGGGAGCTTCTCCGGCACCCACAACCCCAGCTACACCACCGCCCACTAACACCACTTCACCACCACCAGCTGCTTCTGCCCCACCTCCATCTACCCCTGCTTCTCCTCCACCCCCGACAACTCCTGTCTCTCCGCCTCCAGCTCCAACGCCACCAACCCCCGTCGCCCCAGTCACCCCTGTCGCTTCTCCCCCGCCTCCGGTTACTCCACCTCCCACCACTTCCCCTGCACCACCCACAGCCAC...

CDS

Download CDS FASTA

2028 bp · LXL04_018983|LXL04_018983|OH1004|CDS

ATGTCTTCTCCACCGCCGGGAGCTTCTCCGGCACCCACAACCCCAGCTACACCACCGCCCACTAACACCACTTCACCACCACCAGCTGCTTCTGCCCCACCTCCATCTACCCCTGCTTCTCCTCCACCCCCGACAACTCCTGTCTCTCCGCCTCCAGCTCCAACGCCACCAACCCCCGTCGCCCCAGTCACCCCTGTCGCTTCTCCCCCGCCTCCGGTTACTCCACCTCCCACCACTTCCCCTGCACCACCCACAGCCAC...

Protein

Download Protein FASTA

675 aa · LXL04_018983|LXL04_018983|OH1004|PROTEIN

MSSPPPGASPAPTTPATPPPTNTTSPPPAASAPPPSTPASPPPPTTPVSPPPAPTPPTPVAPVTPVASPPPPVTPPPTTSPAPPTATSPPPSTPTPTTPSPSPPSPPGSTPSNRPPPAPRNSPPTTPGQTTPSPPPPRSVSSSPPAAPSSDNSSGISTGAVVGIAIGGVLLLAIFSILFICCKKKKRRTHDPSGFYVPPPPPPKVDPFGNHPQQWQHNAPPPGDHVVMMPPLKPPPMGTRPSQSPARSPSPQPPQRPAFL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018983`
TK1151 ID	TkA05G007310
OH-1004 ID	LXL04_018983
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_018983

Location Chr04:20978643-20981424 (-)

Description Similar to PERK1: Proline-rich receptor-like protein kinase PERK1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g24550`	Proline-rich receptor-like protein kinase PERK1.	No verified direct reference in this release
`At3g24400`	Proline-rich receptor-like protein kinase PERK2.	No verified direct reference in this release
`At2g18470`	Required during abscisic acid (ABA)-mediated activation of Ca(2+) channels.	Plasma membrane-associated proline-rich extensin-like receptor kinase 4, a novel regulator of Ca signalling, is required for abscisic acid responses in Arabidopsis thaliana.2009 · DOI: 10.1111/j.1365-313x.2009.03956.x Arabidopsis proline-rich extensin-like receptor kinase 4 modulates the early event toward abscisic acid response in root tip growth.2009 · DOI: 10.4161/psb.4.11.9739
`At4g34440`	Proline-rich receptor-like protein kinase PERK5.	No verified direct reference in this release
`At1g52290`	Proline-rich receptor-like protein kinase PERK15.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018983 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009611 response to wounding Biological Process

GO:0009620 response to fungus Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009845 seed germination Biological Process

GO:0019722 calcium-mediated signaling Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0048364 root development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0090406 pollen tube Cellular Component

GO:0004672 protein kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G52290

ath:AT2G18470

ath:AT3G24550

ath:AT4G34440

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.862

Rank 1 · LXL04_018983 · OH-1004

Cytoplasm0.110

Rank 2 · LXL04_018983 · OH-1004

Nucleus0.098

Rank 3 · LXL04_018983 · OH-1004

Endoplasmic reticulum0.059

Rank 4 · LXL04_018983 · OH-1004

Golgi apparatus0.018

Rank 5 · LXL04_018983 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase307-508 aa

PF07714.24PK_Tyr_Ser-Thr309-578 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018983	`PF00069.32`	Pkinase	307	508	5.9e-42	144.6
LXL04_018983	`PF07714.24`	PK_Tyr_Ser-Thr	309	578	6e-46	157.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LV48`	Arabidopsis thaliana	Proline-rich receptor-like protein kinase PERK1	60.535%	Swiss-Prot	strong database homology
`Q9LK03`	Arabidopsis thaliana	Proline-rich receptor-like protein kinase PERK2	58.212%	Swiss-Prot	strong database homology
`Q9ZNQ8`	Arabidopsis thaliana	Proline-rich receptor-like protein kinase PERK4	55.219%	Swiss-Prot	strong database homology
`Q8GX23`	Arabidopsis thaliana	Proline-rich receptor-like protein kinase PERK5	51.270%	Swiss-Prot	strong database homology
`Q9C821`	Arabidopsis thaliana	Proline-rich receptor-like protein kinase PERK15	66.753%	Swiss-Prot	moderate database homology

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