LXL04_018940 | RubberDandelionOmics

Gene overview

LXL04_018940

Reference: OH-1004 Chr: Chr04 Coordinates: 20234633-20236216 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

579 bp · LXL04_018940|LXL04_018940|OH1004|cDNA

ATGCAACTGCCACCACCACTACTCAAGCAACGTATGGAGAAAGATGTGGATGAAGTTGGAAAGATTGCACGGTTTATTAAATCAAAAATTGAAGAACTCGACAGGGAGAATTTGGCCAATAGACAGAAACGTGGATGTGGAAAAGGAACTGGAGTTGACCGGTCAAGAACTGCAACTACAATACAAAATGCTCTAAGAGAAAGCATCCATCAAGAACATCGCGAGGTGGTTGAAAGGCGTGTCTATACAGTCACGGGAAC...

CDS

Download CDS FASTA

579 bp · LXL04_018940|LXL04_018940|OH1004|CDS

ATGCAACTGCCACCACCACTACTCAAGCAACGTATGGAGAAAGATGTGGATGAAGTTGGAAAGATTGCACGGTTTATTAAATCAAAAATTGAAGAACTCGACAGGGAGAATTTGGCCAATAGACAGAAACGTGGATGTGGAAAAGGAACTGGAGTTGACCGGTCAAGAACTGCAACTACAATACAAAATGCTCTAAGAGAAAGCATCCATCAAGAACATCGCGAGGTGGTTGAAAGGCGTGTCTATACAGTCACGGGAAC...

Protein

Download Protein FASTA

192 aa · LXL04_018940|LXL04_018940|OH1004|PROTEIN

MQLPPPLLKQRMEKDVDEVGKIARFIKSKIEELDRENLANRQKRGCGKGTGVDRSRTATTIQNALRESIHQEHREVVERRVYTVTGTRADEETIDQLIETGDSEQIFQKAIREQGRGQVLDTLADIQERHDAVREVSSAVDHVQDGNKALYKAKSLQKNSRKWMCIAILILLIIIAVVVVGVLKPWKSGNGA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018940`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_018940

Location Chr04:20234633-20236216 (-)

Description Similar to SYP131: Putative syntaxin-131

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g03800`	Vesicle trafficking protein that functions in the secretory pathway.	No verified direct reference in this release
`At5g08080`	Vesicle trafficking protein that functions in the secretory pathway (Probable).	Syntaxin of plant proteins SYP123 and SYP132 mediate root hair tip growth in Arabidopsis thaliana.2014 · DOI: 10.1093/pcp/pcu048 Concerted Action of Evolutionarily Ancient and Novel SNARE Complexes in Flowering-Plant Cytokinesis.2018 · DOI: 10.1016/j.devcel.2017.12.027 Unusual Roles of Secretory SNARE SYP132 in Plasma Membrane H+-ATPase Traffic and Vegetative Plant Growth.2019 · DOI: 10.1104/pp.19.00266
`At1g61290`	Vesicle trafficking protein that functions in the secretory pathway.	No verified direct reference in this release
`At3g11820`	Vesicle trafficking protein that functions in the secretory pathway (By similarity).	Arabidopsis SNAREs SYP61 and SYP121 coordinate the trafficking of plasma membrane aquaporin PIP2;7 to modulate the cell membrane water permeability.2014 · DOI: 10.1105/tpc.114.127159

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0164300`	Vesicle trafficking protein that functions in the secretory pathway (By similarity).	The Rice Qa-SNAREs in SYP13 Subfamily Are Involved in Regulating Arbuscular Mycorrhizal Symbiosis and Seed Fertility.2022 · DOI: 10.3389/fpls.2022.898286

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018940 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006612 protein targeting to membrane Biological Process

GO:0006886 intracellular protein transport Biological Process

GO:0006887 exocytosis Biological Process

GO:0006897 endocytosis Biological Process

GO:0006906 vesicle fusion Biological Process

GO:0006952 defense response Biological Process

GO:0009620 response to fungus Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0010119 regulation of stomatal movement Biological Process

GO:0010148 transpiration Biological Process

GO:0016192 vesicle-mediated transport Biological Process

KEGG gene cross-reference

ath:AT1G61290

ath:AT3G11820

ath:AT5G08080

dosa:Os07g0164300

osa:4342474

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.413

Rank 1 · LXL04_018940 · OH-1004

Cell membrane0.394

Rank 2 · LXL04_018940 · OH-1004

Nucleus0.154

Rank 3 · LXL04_018940 · OH-1004

Extracellular0.093

Rank 4 · LXL04_018940 · OH-1004

Endoplasmic reticulum0.071

Rank 5 · LXL04_018940 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00804.32Syntaxin8-111 aa

PF05739.27SNARE135-170 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018940	`PF00804.32`	Syntaxin	8	111	8e-26	91.4
LXL04_018940	`PF05739.27`	SNARE	135	170	3.6e-07	30.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SRV7`	Arabidopsis thaliana	Putative syntaxin-131	63.319%	Swiss-Prot	strong database homology
`Q8VZU2`	Arabidopsis thaliana	Syntaxin-132	64.889%	Swiss-Prot	strong database homology
`O64791`	Arabidopsis thaliana	Syntaxin-124	38.009%	Swiss-Prot	moderate database homology
`Q9ZSD4`	Arabidopsis thaliana	Syntaxin-121	44.000%	Swiss-Prot	moderate database homology
`Q7XIE2`	Oryza sativa subsp. japonica	Syntaxin-132	54.867%	Swiss-Prot	strong database homology

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