LXL04_018895 | RubberDandelionOmics

Gene overview

LXL04_018895

Reference: OH-1004 Chr: Chr04 Coordinates: 19796109-19796661 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

429 bp · LXL04_018895|LXL04_018895|OH1004|cDNA

ATGGGTGGTGATGATCAACATCCACATGATAATCAAATGCGTTCTTCTCCACCACCACCGTCGCCGCCAGCTAAGGATGATATGATTGGATATGTGATGGCATTGGAGGCTGCTTTACTTCCATGTCTTCCTGCAAGAGAGCTTCAAGCAATTGATCGATCTCCCCACCCTTCACATCAAATTGATGTTGAAAGACATGCTAGAGATTTTATGGAGGCTGCAAGAAAACTTCAACTTTACTTTATCAGTCTGCAACGTGA...

CDS

Download CDS FASTA

429 bp · LXL04_018895|LXL04_018895|OH1004|CDS

ATGGGTGGTGATGATCAACATCCACATGATAATCAAATGCGTTCTTCTCCACCACCACCGTCGCCGCCAGCTAAGGATGATATGATTGGATATGTGATGGCATTGGAGGCTGCTTTACTTCCATGTCTTCCTGCAAGAGAGCTTCAAGCAATTGATCGATCTCCCCACCCTTCACATCAAATTGATGTTGAAAGACATGCTAGAGATTTTATGGAGGCTGCAAGAAAACTTCAACTTTACTTTATCAGTCTGCAACGTGA...

Protein

Download Protein FASTA

142 aa · LXL04_018895|LXL04_018895|OH1004|PROTEIN

MGGDDQHPHDNQMRSSPPPPSPPAKDDMIGYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAARKLQLYFISLQREDQPTKEEILQKDIAMMEEELKTKNELIKKQERWIQGWRKELKDQLEKHNTELERV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018895`
TK1151 ID	TkA05G003210
OH-1004 ID	LXL04_018895
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_018895

Location Chr04:19796109-19796661 (+)

Description Similar to MED28: Mediator of RNA polymerase II transcription subunit 28

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g52860`	Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018895 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:1900055 regulation of leaf senescence Biological Process

GO:0005634 nucleus Cellular Component

GO:0016592 mediator complex Cellular Component

KEGG gene cross-reference

ath:AT3G52860

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.836

Rank 1 · LXL04_018895 · OH-1004

Cytoplasm0.283

Rank 2 · LXL04_018895 · OH-1004

Cell membrane0.041

Rank 3 · LXL04_018895 · OH-1004

Endoplasmic reticulum0.022

Rank 4 · LXL04_018895 · OH-1004

Mitochondrion0.021

Rank 5 · LXL04_018895 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF11594.14Med2831-128 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018895	`PF11594.14`	Med28	31	128	2.8e-25	89.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LFA5`	Arabidopsis thaliana	Mediator of RNA polymerase II transcription subunit 28	67.939%	Swiss-Prot	strong database homology

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