Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1341 bp · LXL04_018857|LXL04_018857|OH1004|cDNA
AGAAAGTTTTACCCATTTTCCCCAGACAGCGCAGACTCTCAAGTGTAGAGAGAgagttttagagagagaaagtTTTAGACAGTTCGAGATCACCgagaggaagagagagagagagaagcgGCATTAATGGAGGAAGGTCACACACCGCGAAAGCACAACGACGACAGTGTGAAGCTGTTCGTCGGCCAAGTTCCGAAGCATATGACGGAGGCACAACTTATAGCAATGTTCAAAGAGCTTGCTCTTGTGGACGAAGTCAA...
1215 bp · LXL04_018857|LXL04_018857|OH1004|CDS
ATGGAGGAAGGTCACACACCGCGAAAGCACAACGACGACAGTGTGAAGCTGTTCGTCGGCCAAGTTCCGAAGCATATGACGGAGGCACAACTTATAGCAATGTTCAAAGAGCTTGCTCTTGTGGACGAAGTCAACATCATCAAAGACAAGGCCACGCGAGCTTCTCGAGGTTGTTGCTTTGTTATATGTCCGTCTAGGGAGGAAGCAGACAAGGCCGTGGATGGATTTCATAATAAAAAAACCTTACCTGGGGCATCTAG...
Protein
Download Protein FASTA404 aa · LXL04_018857|LXL04_018857|OH1004|PROTEIN
MEEGHTPRKHNDDSVKLFVGQVPKHMTEAQLIAMFKELALVDEVNIIKDKATRASRGCCFVICPSREEADKAVDGFHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNISEGEVSELFSQYGTLKDLQILRGSQQTSKGCAFVKYETKEQAVAAIEGLNGKHKMEGSTVPLVVKWADTEKERQARKAQKAQSLANIDPTQHPSLFGALPMGYMSPYNGYGYQASGTYGLMQPPFASLSPNQASAFRGGSPSPRNY...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_018857 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_018857 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:19263066-19266674 (-) | |||||||||
| Description | Similar to BRN2: RNA-binding protein BRN2 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000381 regulation of alternative mRNA splicing, via spliceosome Biological Process GO:0006376 mRNA splice site recognition Biological Process GO:0006402 mRNA catabolic process Biological Process GO:0009626 plant-type hypersensitive response Biological Process GO:0009908 flower development Biological Process GO:0048026 positive regulation of mRNA splicing, via spliceosome Biological Process GO:0048573 photoperiodism, flowering Biological Process GO:0080151 positive regulation of salicylic acid mediated signaling pathway Biological Process GO:2000028 regulation of photoperiodism, flowering Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G03457 ath:AT4G03110 bta:513347 xtr:100036604 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00076.29RRM_117-80 aaPF00076.29RRM_1105-172 aaPF00076.29RRM_1320-390 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_018857 | PF00076.29 | RRM_1 | 17 | 80 | 7.8e-53 | 177.0 |
| LXL04_018857 | PF00076.29 | RRM_1 | 105 | 172 | 7.8e-53 | 177.0 |
| LXL04_018857 | PF00076.29 | RRM_1 | 320 | 390 | 7.8e-53 | 177.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.