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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_018852
Reference: OH-1004 Chr: Chr04 Coordinates: 19171748-19177834 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2709 bp · LXL04_018852|LXL04_018852|OH1004|cDNA

ATGGATCCGAAGCCGTGGCTACATCCGGCTCCAACTTATTTCCCATTGGAGACGTTTTGGGACACAGACGACGACTCCCCTGGCCCTCGCTGTGGCCACACTCTTACCGCCGTTGCCCCAACCAAATCTCACGGACCTCGGCTTGTTTTATTCGGTGGCGCTACAGCCATTGAAGGCGGAACCTCCTCCGGCATCCGATTAGCCGGAGTGACAAATTCTGTTCACTCGTATGATGTTCTAAATAAGAAATGGACAAGGTT...

CDS

Download CDS FASTA

2709 bp · LXL04_018852|LXL04_018852|OH1004|CDS

ATGGATCCGAAGCCGTGGCTACATCCGGCTCCAACTTATTTCCCATTGGAGACGTTTTGGGACACAGACGACGACTCCCCTGGCCCTCGCTGTGGCCACACTCTTACCGCCGTTGCCCCAACCAAATCTCACGGACCTCGGCTTGTTTTATTCGGTGGCGCTACAGCCATTGAAGGCGGAACCTCCTCCGGCATCCGATTAGCCGGAGTGACAAATTCTGTTCACTCGTATGATGTTCTAAATAAGAAATGGACAAGGTT...

Protein

Download Protein FASTA

902 aa · LXL04_018852|LXL04_018852|OH1004|PROTEIN

MDPKPWLHPAPTYFPLETFWDTDDDSPGPRCGHTLTAVAPTKSHGPRLVLFGGATAIEGGTSSGIRLAGVTNSVHSYDVLNKKWTRLLQFYTVIALKLPILLGNRMLIYENYFRMRPAGEAPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKYKWHRVVVQGQGPGPRYGHVMDLVAQRYLVTFSGNDGKKVLSDTWALDTAQKPYQWLKLNTEGDKPSARMYATACARSDGMFLLCGGRDTSGTPLDDA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_018852
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_018852
LocationChr04:19171748-19177834 (+)
DescriptionSimilar to BSL1: Serine/threonine-protein phosphatase BSL1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g03080 Phosphatase involved in elongation process, probably by acting as a regulator of brassinolide signaling. No verified direct reference in this release
At1g08420 Phosphatase involved in elongation process, probably by acting as a regulator of brassinolide signaling. No verified direct reference in this release
At1g03445 Phosphatase that acts as a positive regulator of brassinosteroid (BR) signaling.
Nuclear protein phosphatases with Kelch-repeat domains modulate the response to brassinosteroids in Arabidopsis.2004 · DOI: 10.1101/gad.1174204

Rice

Reference gene IDPossible functionPapers / DOI
Os05g0144400 Serine/threonine-protein phosphatase BSL1 homolog. No verified direct reference in this release
Os12g0617900 Serine/threonine-protein phosphatase BSL2 homolog. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018852 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0009742 brassinosteroid mediated signaling pathway Biological Process
GO:0032880 regulation of protein localization Biological Process
GO:1900459 positive regulation of brassinosteroid mediated signaling pathway Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0004722 protein serine/threonine phosphatase activity Molecular Function
GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G03445
ath:AT1G08420
ath:AT4G03080
dosa:Os05g0144400
dosa:Os12g0617900
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.577
Rank 1 · LXL04_018852 · OH-1004
Nucleus0.362
Rank 2 · LXL04_018852 · OH-1004
Cell membrane0.110
Rank 3 · LXL04_018852 · OH-1004
Lysosome / Vacuole0.076
Rank 4 · LXL04_018852 · OH-1004
Golgi apparatus0.067
Rank 5 · LXL04_018852 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13415.13Beta-prop_FBX42111-213 aa
PF24681.2Kelch_KLHDC2_KLHL20_DRC7114-301 aa
PF13854.13Kelch_HCF118-372 aa
PF13415.13Beta-prop_FBX42217-325 aa
PF13418.13Beta-prop_TYW4228-323 aa
PF24981.2Beta-prop_ATRN-LZTR1246-326 aa
PF00149.34Metallophos591-807 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_018852PF13415.13Beta-prop_FBX421112132.7e-33116.1
LXL04_018852PF24681.2Kelch_KLHDC2_KLHL20_DRC71143012.8e-42145.2
LXL04_018852PF13854.13Kelch_HCF1183726.8e-1659.2
LXL04_018852PF13415.13Beta-prop_FBX422173252.7e-33116.1
LXL04_018852PF13418.13Beta-prop_TYW42283231.2e-0939.2
LXL04_018852PF24981.2Beta-prop_ATRN-LZTR12463268.6e-2278.5
LXL04_018852PF00149.34Metallophos5918072.1e-36126.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8L7U5Arabidopsis thalianaSerine/threonine-protein phosphatase BSL171.521%Swiss-Protstrong database homology
Q9SJF0Arabidopsis thalianaSerine/threonine-protein phosphatase BSL257.673%Swiss-Protstrong database homology
Q9LR78Arabidopsis thalianaSerine/threonine-protein phosphatase BSU150.561%Swiss-Protstrong database homology
Q60EX6Oryza sativa subsp. japonicaSerine/threonine-protein phosphatase BSL1 homolog69.556%Swiss-Protstrong database homology
Q2QM47Oryza sativa subsp. japonicaSerine/threonine-protein phosphatase BSL2 homolog73.474%Swiss-Protweak database homology

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