LXL04_018850 | RubberDandelionOmics

Gene overview

LXL04_018850

Reference: OH-1004 Chr: Chr04 Coordinates: 19148936-19149671 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

684 bp · LXL04_018850|LXL04_018850|OH1004|cDNA

ATGGAACCCATCCCAGAAACTTACCGTTACGATGTGTTTCTCAGTTTCAGGGGTGGGGATACTCGCGACAACTTCACAAGTCACCTCCATGGAGCTCTCAAACGCAACAATTTCCATGTTTTCCACGACACCTCCCTCCGCCCAGGTTCTATGATCGGCGACCAGTTGTTGGAATGCATCAGGCAATCAAGGATCTTTGTTGTCTTATTCTCAACCAACTACGCTGATTCCAAATGGTGCCTGAAAGAACTTGACCACAT...

CDS

Download CDS FASTA

684 bp · LXL04_018850|LXL04_018850|OH1004|CDS

ATGGAACCCATCCCAGAAACTTACCGTTACGATGTGTTTCTCAGTTTCAGGGGTGGGGATACTCGCGACAACTTCACAAGTCACCTCCATGGAGCTCTCAAACGCAACAATTTCCATGTTTTCCACGACACCTCCCTCCGCCCAGGTTCTATGATCGGCGACCAGTTGTTGGAATGCATCAGGCAATCAAGGATCTTTGTTGTCTTATTCTCAACCAACTACGCTGATTCCAAATGGTGCCTGAAAGAACTTGACCACAT...

Protein

Download Protein FASTA

227 aa · LXL04_018850|LXL04_018850|OH1004|PROTEIN

MEPIPETYRYDVFLSFRGGDTRDNFTSHLHGALKRNNFHVFHDTSLRPGSMIGDQLLECIRQSRIFVVLFSTNYADSKWCLKELDHMMRCVDMKAEHHIILPVFLNVKQSDVGSQRGSYEEAFTHHETRFSQEKVKNWREALRRAGELHGLHLQNDANGSSGRDHEALKDQIVEKVRRLLHRSLDVNEARMPLVGIKSRIQDLISMLEPSCDDVRVVAICGPEVWIC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018850`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_018850

Location Chr04:19148936-19149671 (-)

Description Similar to RPV1: Disease resistance protein RPV1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g64070`	TIR-NB-LRR receptor-like protein that confers resistance to the pathogen Leptosphaeria maculans (blackleg disease).	Transgressive segregation reveals two Arabidopsis TIR-NB-LRR resistance genes effective against Leptosphaeria maculans, causal agent of blackleg disease.2006 · DOI: 10.1111/j.1365-313x.2006.02688.x

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018850 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0007165 signal transduction Biological Process

GO:0019677 NAD+ catabolic process Biological Process

GO:0043068 positive regulation of programmed cell death Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0003953 NAD+ nucleosidase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0042803 protein homodimerization activity Molecular Function

GO:0043531 ADP binding Molecular Function

KEGG gene cross-reference

ag:AAA91022

ath:AT1G64070

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.469

Rank 1 · LXL04_018850 · OH-1004

Cytoplasm0.365

Rank 2 · LXL04_018850 · OH-1004

Nucleus0.189

Rank 3 · LXL04_018850 · OH-1004

Endoplasmic reticulum0.124

Rank 4 · LXL04_018850 · OH-1004

Mitochondrion0.058

Rank 5 · LXL04_018850 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01582.26TIR10-156 aa

PF13676.12TIR_212-109 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018850	`PF01582.26`	TIR	10	156	1e-41	143.4
LXL04_018850	`PF13676.12`	TIR_2	12	109	5.4e-17	63.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4I594`	Arabidopsis thaliana	Disease resistance protein RML1A	36.239%	Swiss-Prot	moderate database homology

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