LXL04_018818 | RubberDandelionOmics

Gene overview

LXL04_018818

Reference: OH-1004 Chr: Chr04 Coordinates: 18617776-18623958 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1719 bp · LXL04_018818|LXL04_018818|OH1004|cDNA

ATGGTGCACCTCGCACCTTCAATGGCGAAACAGCTTGAGTTTTCCTCCGATCACTCAACTGAAGTTCCCAAGCGTGATTACGATCGATTAAACATCGACGCTCTACTCGAGTCCTTGTTTGCTGTTTCCGATTCCGGTTTAATCGACGCCTCATTCGACGGCCTCGTCGAATCTAGGTCTACTGATTCCCTTCAAGACGAATTAATCCAACGCGCTATCCACTTCGGATCCGAGATACTCGAAGCTGGAAAGAGATCCGC...

CDS

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1719 bp · LXL04_018818|LXL04_018818|OH1004|CDS

ATGGTGCACCTCGCACCTTCAATGGCGAAACAGCTTGAGTTTTCCTCCGATCACTCAACTGAAGTTCCCAAGCGTGATTACGATCGATTAAACATCGACGCTCTACTCGAGTCCTTGTTTGCTGTTTCCGATTCCGGTTTAATCGACGCCTCATTCGACGGCCTCGTCGAATCTAGGTCTACTGATTCCCTTCAAGACGAATTAATCCAACGCGCTATCCACTTCGGATCCGAGATACTCGAAGCTGGAAAGAGATCCGC...

Protein

Download Protein FASTA

572 aa · LXL04_018818|LXL04_018818|OH1004|PROTEIN

MVHLAPSMAKQLEFSSDHSTEVPKRDYDRLNIDALLESLFAVSDSGLIDASFDGLVESRSTDSLQDELIQRAIHFGSEILEAGKRSASKRSSDHNASVWPLSPDLTIKVFSMLDTPSVWSAASTCLFFQKCAKDPLCYTNIDLAALVPKIRPKIIVPKINARVSTMIEHAGNALQSIKLCAPYYDEAATLEEMLPIFTCSCLSSLTANGGAPGDVHISRILESVSRYCCLLERFEYVGGSSDLLEASVCKEFVFNCPKIT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018818`
TK1151 ID	TkA08G084130
OH-1004 ID	LXL04_018818
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	88.600
Protein coverage (%)	TK1151 100.000 / OH-1004 29.196 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_018818

Location Chr04:18617776-18623958 (+)

Description Similar to At4g02760: F-box protein At4g02760

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g02760`	F-box protein At4g02760.	No verified direct reference in this release
`At4g02740`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At4g02733`	F-box protein At4g02733.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018818 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016567 protein ubiquitination Biological Process

GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0019005 SCF ubiquitin ligase complex Cellular Component

KEGG gene cross-reference

ath:AT4G02733

ath:AT4G02740

ath:AT4G02760

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.524

Rank 1 · LXL04_018818 · OH-1004

Nucleus0.419

Rank 2 · LXL04_018818 · OH-1004

Cell membrane0.082

Rank 3 · LXL04_018818 · OH-1004

Mitochondrion0.076

Rank 4 · LXL04_018818 · OH-1004

Endoplasmic reticulum0.056

Rank 5 · LXL04_018818 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SY03`	Arabidopsis thaliana	F-box protein At4g02760	31.070%	Swiss-Prot	moderate database homology
`Q0WRC9`	Arabidopsis thaliana	F-box protein SKIP17	31.675%	Swiss-Prot	moderate database homology
`Q2V3L6`	Arabidopsis thaliana	F-box protein At4g02733	33.125%	Swiss-Prot	weak database homology

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