LXL04_018813 | RubberDandelionOmics

Gene overview

LXL04_018813

Reference: OH-1004 Chr: Chr04 Coordinates: 18534762-18537629 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1167 bp · LXL04_018813|LXL04_018813|OH1004|cDNA

ATGGCTGTTCATCTATCTAGTGTATTTTTCAGCAAAGCTTCAATTTCACCGCCTATAGTTCAATATCAAAGGAGACCGTCGTTAACGGTGGTTGCATCCGCCTCCCCGGCGCCTCCTCCTTCAGCTCCACCCACTATTCAGGCAAGTCATCTATTTGCTTCTAGGCAGTTCTTAATATTTATTATTGGTGGAAAATCTGCAAATTGGTACGGAAATGGTGACATGAATTCTAGTAATGCAATCGTCTCTTATGAAGACAG...

CDS

Download CDS FASTA

1167 bp · LXL04_018813|LXL04_018813|OH1004|CDS

ATGGCTGTTCATCTATCTAGTGTATTTTTCAGCAAAGCTTCAATTTCACCGCCTATAGTTCAATATCAAAGGAGACCGTCGTTAACGGTGGTTGCATCCGCCTCCCCGGCGCCTCCTCCTTCAGCTCCACCCACTATTCAGGCAAGTCATCTATTTGCTTCTAGGCAGTTCTTAATATTTATTATTGGTGGAAAATCTGCAAATTGGTACGGAAATGGTGACATGAATTCTAGTAATGCAATCGTCTCTTATGAAGACAG...

Protein

Download Protein FASTA

388 aa · LXL04_018813|LXL04_018813|OH1004|PROTEIN

MAVHLSSVFFSKASISPPIVQYQRRPSLTVVASASPAPPPSAPPTIQASHLFASRQFLIFIIGGKSANWYGNGDMNSSNAIVSYEDSYDWADLETDLYHWTKSLRPVQWYPGHIGKTERELKEQLKLMDVVIEVRDGRIPMSTSHPLMDSWLGNRKRILVLNREDMISTADRNAWADYYGRQGIKVVFSNGQLGMGTMKLGRLAKSVAAAVNIKRRARGLLPRPVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018813`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_018813

Location Chr04:18534762-18537629 (+)

Description Similar to DGP3: DAR GTPase 3, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g02790`	GTPase that may function in chloroplast ribosome assembly (Probable).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018813 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006412 translation Biological Process

GO:0042254 ribosome biogenesis Biological Process

GO:0070129 regulation of mitochondrial translation Biological Process

GO:1902775 mitochondrial large ribosomal subunit assembly Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0003723 RNA binding Molecular Function

GO:0003924 GTPase activity Molecular Function

GO:0005525 GTP binding Molecular Function

KEGG gene cross-reference

ath:AT4G02790

bce:BC3836

bss:BSUW23_08265

bsu:BSU16050

gwc:GWCH70_1095

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.579

Rank 1 · LXL04_018813 · OH-1004

Mitochondrion0.384

Rank 2 · LXL04_018813 · OH-1004

Nucleus0.059

Rank 3 · LXL04_018813 · OH-1004

Cytoplasm0.034

Rank 4 · LXL04_018813 · OH-1004

Cell membrane0.011

Rank 5 · LXL04_018813 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01926.30MMR_HSR1227-284 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018813	`PF01926.30`	MMR_HSR1	227	284	4.5e-16	59.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8H1F6`	Arabidopsis thaliana	DAR GTPase 3, chloroplastic	62.567%	Swiss-Prot	strong database homology

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