LXL04_018772 | RubberDandelionOmics

Gene overview

LXL04_018772

Reference: OH-1004 Chr: Chr04 Coordinates: 18000001-18000558 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

452 bp · LXL04_018772|LXL04_018772|OH1004|cDNA

CCAAAAGCACCAAAAGAAACTCATCGGAGATGAGTCAAATTGAAACCGTCGAATCAAAATCCTCCCGTCCGGCAAAGGAACAAGTCGTTGGATGGCCACCGGTGAGATCCTACCGGAAAAACGTATTACAAGGGAAGAAAATGTTGCCGGAGATGGGATCCGCTATGTATGTGAAAGTGAGCATGGATGGAGCTCCATATTTGAGAAAAATTGACCTAAAAGTATACAAAGGCTACGTGGAGTTGATGAAGGGTTTACAA...

CDS

Download CDS FASTA

423 bp · LXL04_018772|LXL04_018772|OH1004|CDS

ATGAGTCAAATTGAAACCGTCGAATCAAAATCCTCCCGTCCGGCAAAGGAACAAGTCGTTGGATGGCCACCGGTGAGATCCTACCGGAAAAACGTATTACAAGGGAAGAAAATGTTGCCGGAGATGGGATCCGCTATGTATGTGAAAGTGAGCATGGATGGAGCTCCATATTTGAGAAAAATTGACCTAAAAGTATACAAAGGCTACGTGGAGTTGATGAAGGGTTTACAAAAGATGTTTTTGTGCACAATAGGGTTGTA...

Protein

Download Protein FASTA

140 aa · LXL04_018772|LXL04_018772|OH1004|PROTEIN

MSQIETVESKSSRPAKEQVVGWPPVRSYRKNVLQGKKMLPEMGSAMYVKVSMDGAPYLRKIDLKVYKGYVELMKGLQKMFLCTIGLYDENERYDGTKHAATYEDKDGDWMLVGDVPWEMFVTSCKRLRIMKGCEARGLDL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018772`
TK1151 ID	TkA08G082470
OH-1004 ID	LXL04_018772
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 59.829 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_018772

Location Chr04:18000001-18000558 (+)

Description Similar to AUX22D: Auxin-induced protein 22D

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g43700`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018772 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009733 response to auxin Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0042802 identical protein binding Molecular Function

KEGG gene cross-reference

ath:AT5G43700

vra:106757071

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.764

Rank 1 · LXL04_018772 · OH-1004

Cytoplasm0.255

Rank 2 · LXL04_018772 · OH-1004

Cell membrane0.098

Rank 3 · LXL04_018772 · OH-1004

Endoplasmic reticulum0.038

Rank 4 · LXL04_018772 · OH-1004

Plastid0.017

Rank 5 · LXL04_018772 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02309.23AUX_IAA7-138 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018772	`PF02309.23`	AUX_IAA	7	138	1.6e-53	182.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P33077`	Arabidopsis thaliana	Auxin-responsive protein IAA4	66.165%	Swiss-Prot	strong database homology

JBrowse

View in Genome Browser

Gene Card