LXL04_018742 | RubberDandelionOmics

Gene overview

LXL04_018742

Reference: OH-1004 Chr: Chr04 Coordinates: 17481169-17484258 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1254 bp · LXL04_018742|LXL04_018742|OH1004|cDNA

ATGGACGACGATAAAGATCCTCATTCACCAATCGAAACCTTCCACGATTCCATAGAAGGAGAATCCACACAAAAAAAGCAAGAAACTTCGATTGCTATAGAGTTAAAAAAGAAGAAAAGGAAAGCTTTAATCGAGCTTCGTTCCCGTCTCGAAGATTCCATACTCAATTACACCCTCATCGGAGAAAAATACAAAGCCAACGACCATCTTAGAGAATTACACCTCTGGGGTGTGCCATTGTTACCCAGTCGAGGTCTCGA...

CDS

Download CDS FASTA

1254 bp · LXL04_018742|LXL04_018742|OH1004|CDS

ATGGACGACGATAAAGATCCTCATTCACCAATCGAAACCTTCCACGATTCCATAGAAGGAGAATCCACACAAAAAAAGCAAGAAACTTCGATTGCTATAGAGTTAAAAAAGAAGAAAAGGAAAGCTTTAATCGAGCTTCGTTCCCGTCTCGAAGATTCCATACTCAATTACACCCTCATCGGAGAAAAATACAAAGCCAACGACCATCTTAGAGAATTACACCTCTGGGGTGTGCCATTGTTACCCAGTCGAGGTCTCGA...

Protein

Download Protein FASTA

417 aa · LXL04_018742|LXL04_018742|OH1004|PROTEIN

MDDDKDPHSPIETFHDSIEGESTQKKQETSIAIELKKKKRKALIELRSRLEDSILNYTLIGEKYKANDHLRELHLWGVPLLPSRGLEKTDIILKKFLKAKDYNVQNAFDMIVNTIKWREDFNVDKVFDEEFGSDLDNIGHIEGKDKAGHPLCYQLFEAFKDKETLRKRLGTKDSCDQFLRWRIKLMEGCVLNIDFKPDGADSVIQIMDVKNIPRPFLNELFVGSKKYFSILQENYPGIIYRIVIINVPMWFFAFYTLNMR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018742`
TK1151 ID	TkA08G080470
OH-1004 ID	LXL04_018742
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_018742

Location Chr04:17481169-17484258 (+)

Description Similar to PATL4: Patellin-4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g30690`	Carrier protein that may be involved in membrane-trafficking events associated with cell plate formation during cytokinesis.	No verified direct reference in this release
`At4g09160`	Carrier protein that may be involved in membrane-trafficking events associated with cell plate formation during cytokinesis.	No verified direct reference in this release
`At1g72160`	Carrier protein that may be involved in membrane-trafficking events associated with cell plate formation during cytokinesis.	No verified direct reference in this release
`At3g51670`	Carrier protein that may be involved in membrane-trafficking events associated with cell-plate formation during cytokinesis.	No verified direct reference in this release
`At1g22530`	Carrier protein that may be involved in membrane-trafficking events associated with cell plate formation during cytokinesis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018742 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0051301 cell division Biological Process

GO:0071365 cellular response to auxin stimulus Biological Process

GO:1901703 protein localization involved in auxin polar transport Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0002020 protease binding Molecular Function

GO:0008289 lipid binding Molecular Function

KEGG gene cross-reference

ath:AT1G22530

ath:AT1G30690

ath:AT1G72160

ath:AT3G51670

ath:AT4G09160

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.379

Rank 1 · LXL04_018742 · OH-1004

Endoplasmic reticulum0.192

Rank 2 · LXL04_018742 · OH-1004

Cell membrane0.152

Rank 3 · LXL04_018742 · OH-1004

Nucleus0.145

Rank 4 · LXL04_018742 · OH-1004

Mitochondrion0.115

Rank 5 · LXL04_018742 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03765.22CRAL_TRIO_N45-113 aa

PF00650.26CRAL_TRIO139-295 aa

PF25099.2GOLD_PATL1_C316-395 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018742	`PF03765.22`	CRAL_TRIO_N	45	113	2.3e-06	28.4
LXL04_018742	`PF00650.26`	CRAL_TRIO	139	295	2.6e-19	70.3
LXL04_018742	`PF25099.2`	GOLD_PATL1_C	316	395	5.9e-27	94.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q94C59`	Arabidopsis thaliana	Patellin-4	41.765%	Swiss-Prot	moderate database homology
`Q9M0R2`	Arabidopsis thaliana	Patellin-5	36.896%	Swiss-Prot	moderate database homology
`Q56Z59`	Arabidopsis thaliana	Patellin-3	34.949%	Swiss-Prot	moderate database homology
`Q9SCU1`	Arabidopsis thaliana	Patellin-6	35.369%	Swiss-Prot	moderate database homology
`Q56ZI2`	Arabidopsis thaliana	Patellin-2	34.890%	Swiss-Prot	moderate database homology

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