Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1854 bp · LXL04_018696|LXL04_018696|OH1004|cDNA
ATGTCTGAAGTTCCGTCGTTGATCACTTTATGCATAGGCGCAATCAAAGATGCGATCCTTGATGAAAACGGCAATTTACCTTATGTTTACAAACTTCCTGCTGAATTGTTTGATCAACTCTTACCTAACCTACCTCCATTGGCACTGCAGAATCTACAGGACGCCATGCCATCAGTTAGCTTTAGTGATCATGATTTCGATGATGATAGCTTAAAACCTTCAAAAAAACGGAAAAGATCTGAGAACTTTGATATAGCATG...
1854 bp · LXL04_018696|LXL04_018696|OH1004|CDS
ATGTCTGAAGTTCCGTCGTTGATCACTTTATGCATAGGCGCAATCAAAGATGCGATCCTTGATGAAAACGGCAATTTACCTTATGTTTACAAACTTCCTGCTGAATTGTTTGATCAACTCTTACCTAACCTACCTCCATTGGCACTGCAGAATCTACAGGACGCCATGCCATCAGTTAGCTTTAGTGATCATGATTTCGATGATGATAGCTTAAAACCTTCAAAAAAACGGAAAAGATCTGAGAACTTTGATATAGCATG...
Protein
Download Protein FASTA617 aa · LXL04_018696|LXL04_018696|OH1004|PROTEIN
MSEVPSLITLCIGAIKDAILDENGNLPYVYKLPAELFDQLLPNLPPLALQNLQDAMPSVSFSDHDFDDDSLKPSKKRKRSENFDIAWKTLYESRWSDVQKLTTDSLPEDDSTTNWQQIYWERHLQNCLDAVAEMVQITLFDGFLGDVEISDALLKSITYEGHLSRPKNYLKLDYHCERFGLYARCVRLQSVHCVAEIGHLLRKSRLQYLETHWIKSKEQVDGLCKLLDQNKDTLSTLEFLHCKLPASLVTAICESLFIKG...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_018696 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_018696 |
|---|---|
| Location | Chr04:16858475-16862159 (-) |
| Description | Similar to NLRP5: NACHT, LRR and PYD domains-containing protein 5 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006887 exocytosis Biological Process GO:0007015 actin filament organization Biological Process GO:0032880 regulation of protein localization Biological Process GO:0040019 positive regulation of embryonic development Biological Process GO:0051293 establishment of spindle localization Biological Process GO:0051302 regulation of cell division Biological Process GO:0051656 establishment of organelle localization Biological Process GO:0140089 protein storage Biological Process GO:0005634 nucleus Cellular Component GO:0005730 nucleolus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component |
| KEGG gene cross-reference | bta:493717 cbr:CBG_23501 cel:CELE_F28C1.3 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF29255.1LRR_NLRC3290-466 aaPF29265.1LRR_CARMIL358-579 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_018696 | PF29255.1 | LRR_NLRC3 | 290 | 466 | 8.5e-11 | 41.9 |
| LXL04_018696 | PF29265.1 | LRR_CARMIL | 358 | 579 | 7.2e-06 | 25.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.