LXL04_018577 | RubberDandelionOmics

Gene overview

LXL04_018577

Reference: OH-1004 Chr: Chr04 Coordinates: 15004433-15007949 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2115 bp · LXL04_018577|LXL04_018577|OH1004|cDNA

ATGAAGAAGGCGCTACTGCCTGTGAAAAGTATCAGCAAGGAGACGAAAATTTCCGGGAAAGAAGCTCTAACAAAGCTCTTGAGATGGCATTTTGGGCATCCGGAGTATCGAGGAAAGCAACTGGAAGCCATCGAAGCTGTTCTATCCGGAACAGATTGTTTCTGTCTAATGTCGACTGGTGGTGGGAAGTCAATTTGTTATCAAATCCCTGCCCTAGCAAAACGGGGCATTGTGCTTGTTGTTTCTCCTTTAATAGGTGA...

CDS

Download CDS FASTA

2115 bp · LXL04_018577|LXL04_018577|OH1004|CDS

ATGAAGAAGGCGCTACTGCCTGTGAAAAGTATCAGCAAGGAGACGAAAATTTCCGGGAAAGAAGCTCTAACAAAGCTCTTGAGATGGCATTTTGGGCATCCGGAGTATCGAGGAAAGCAACTGGAAGCCATCGAAGCTGTTCTATCCGGAACAGATTGTTTCTGTCTAATGTCGACTGGTGGTGGGAAGTCAATTTGTTATCAAATCCCTGCCCTAGCAAAACGGGGCATTGTGCTTGTTGTTTCTCCTTTAATAGGTGA...

Protein

Download Protein FASTA

704 aa · LXL04_018577|LXL04_018577|OH1004|PROTEIN

MKKALLPVKSISKETKISGKEALTKLLRWHFGHPEYRGKQLEAIEAVLSGTDCFCLMSTGGGKSICYQIPALAKRGIVLVVSPLIGERSSTIIWMFIKVEPCTTQCFPWFSLENQVMALKEKGVAAEYLSSTQTSQVRNKIHGELESGNPSIRLLYVTPELIATAGFMSKLTKLHSRGLLNLIAIDEAHCISTWGHDFRPSYRKLASLRKRLPDIPILALTATAVPKVQVDVIESLNMQNPLVLMSSFNRPNIHYEVRFK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018577`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_018577

Location Chr04:15004433-15007949 (+)

Description Similar to RECQL3: ATP-dependent DNA helicase Q-like 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g35740`	3'-5' DNA helicase that may play a role in the repair of DNA.	Biochemical characterization of AtRECQ3 reveals significant differences relative to other RecQ helicases.2009 · DOI: 10.1104/pp.109.144709

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018577 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000077 DNA damage checkpoint signaling Biological Process

GO:0000278 mitotic cell cycle Biological Process

GO:0000712 resolution of meiotic recombination intermediates Biological Process

GO:0000724 double-strand break repair via homologous recombination Biological Process

GO:0000731 DNA synthesis involved in DNA repair Biological Process

GO:0000732 DNA strand displacement Biological Process

GO:0006259 DNA metabolic process Biological Process

GO:0006260 DNA replication Biological Process

GO:0006281 DNA repair Biological Process

GO:0006302 double-strand break repair Biological Process

GO:0006303 double-strand break repair via nonhomologous end joining Biological Process

GO:0006310 DNA recombination Biological Process

KEGG gene cross-reference

ath:AT4G35740

cel:CELE_T04A11.6

dme:Dmel_CG6920

hsa:9400

mmu:170472

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.864

Rank 1 · LXL04_018577 · OH-1004

Cytoplasm0.184

Rank 2 · LXL04_018577 · OH-1004

Mitochondrion0.046

Rank 3 · LXL04_018577 · OH-1004

Cell membrane0.022

Rank 4 · LXL04_018577 · OH-1004

Endoplasmic reticulum0.013

Rank 5 · LXL04_018577 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00270.36DEAD40-84 aa

PF00270.36DEAD129-225 aa

PF00271.38Helicase_C269-373 aa

PF16124.11RecQ_Zn_bind387-453 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018577	`PF00270.36`	DEAD	40	84	1.2e-17	64.8
LXL04_018577	`PF00270.36`	DEAD	129	225	1.2e-17	64.8
LXL04_018577	`PF00271.38`	Helicase_C	269	373	3.6e-18	66.5
LXL04_018577	`PF16124.11`	RecQ_Zn_bind	387	453	1.4e-12	48.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FT72`	Arabidopsis thaliana	ATP-dependent DNA helicase Q-like 3	58.449%	Swiss-Prot	strong database homology

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