LXL04_018496 | RubberDandelionOmics

Gene overview

LXL04_018496

Reference: OH-1004 Chr: Chr04 Coordinates: 13769205-13770693 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

681 bp · LXL04_018496|LXL04_018496|OH1004|cDNA

ATGATGGCCGGAGACTCGTCGGAATCAGTTCACCCTTTTATACCTTCAGATCTCATTCTGCCGGATTATGTACCGATTATACTCTCTCAATCTACCATTCTCAGTGTTTATGGCTGCGCTTCCTTGCTTGTCGTCTCCTTCGTCTGGATCCTCGCCGGGCGGTTTCCTAAAATATCAAAACTCGACAAAACTCTCATGTGCTGGTGGGTTTTCACTGGCCTCACTCACATGATCCTCGAAGGTTACTTTGTTTTCACTCC...

CDS

Download CDS FASTA

681 bp · LXL04_018496|LXL04_018496|OH1004|CDS

ATGATGGCCGGAGACTCGTCGGAATCAGTTCACCCTTTTATACCTTCAGATCTCATTCTGCCGGATTATGTACCGATTATACTCTCTCAATCTACCATTCTCAGTGTTTATGGCTGCGCTTCCTTGCTTGTCGTCTCCTTCGTCTGGATCCTCGCCGGGCGGTTTCCTAAAATATCAAAACTCGACAAAACTCTCATGTGCTGGTGGGTTTTCACTGGCCTCACTCACATGATCCTCGAAGGTTACTTTGTTTTCACTCC...

Protein

Download Protein FASTA

226 aa · LXL04_018496|LXL04_018496|OH1004|PROTEIN

MMAGDSSESVHPFIPSDLILPDYVPIILSQSTILSVYGCASLLVVSFVWILAGRFPKISKLDKTLMCWWVFTGLTHMILEGYFVFTPEFFKQTNPTYLAEVWKEYSKGDSRYAGRDSAVVAIEGITAVLEGPACILAAYAIATRKSYSHILQISIALGQLYGTAVYFITSYLEGDNFAASPLYYYSYYIFANSFWVWIPSLIVIRSWKKICAAVGSTQEQKKTKRR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018496`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_018496

Location Chr04:13769205-13770693 (-)

Description Similar to Os01g0103600: Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g20050`	Catalyzes the conversion of Delta(8)-sterols to their corresponding Delta(7)-isomers.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0103600`	Catalyzes the conversion of Delta(8)-sterols to their corresponding Delta(7)-isomers.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018496 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016126 sterol biosynthetic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0000247 C-8 sterol isomerase activity Molecular Function

GO:0004769 steroid Delta-isomerase activity Molecular Function

GO:0047750 cholestenol delta-isomerase activity Molecular Function

KEGG gene cross-reference

ath:AT1G20050

dosa:Os01g0103600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.685

Rank 1 · LXL04_018496 · OH-1004

Golgi apparatus0.167

Rank 2 · LXL04_018496 · OH-1004

Nucleus0.099

Rank 3 · LXL04_018496 · OH-1004

Cytoplasm0.095

Rank 4 · LXL04_018496 · OH-1004

Cell membrane0.090

Rank 5 · LXL04_018496 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05241.18EBP98-206 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018496	`PF05241.18`	EBP	98	206	5.3e-24	85.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O48962`	Arabidopsis thaliana	Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase	65.179%	Swiss-Prot	strong database homology
`Q9FTZ2`	Oryza sativa subsp. japonica	Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase	60.465%	Swiss-Prot	strong database homology

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