Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2334 bp · LXL04_018491|LXL04_018491|OH1004|cDNA
ATGGATCATATAAGTAACGAGGCCAATGTTGATCCGTTCTCAATCGGACCTTCAACGACCCTTGGCCGGACTATTGCTTTCGAAGTTCTATTCTGCAGGTCAATCTCACTATTGAGGCACAAAATCGCTCGTCTATTATTTCATTACTTTCATAGCATTAGGACATGTGTTTCCGGCACCGTTATCCCCGTGATCTCATGGTTGCATCCTCGTAATCCGCAAGGAATACTATTGTTAGTAACAGTAATCGCATTCCTACT...
2334 bp · LXL04_018491|LXL04_018491|OH1004|CDS
ATGGATCATATAAGTAACGAGGCCAATGTTGATCCGTTCTCAATCGGACCTTCAACGACCCTTGGCCGGACTATTGCTTTCGAAGTTCTATTCTGCAGGTCAATCTCACTATTGAGGCACAAAATCGCTCGTCTATTATTTCATTACTTTCATAGCATTAGGACATGTGTTTCCGGCACCGTTATCCCCGTGATCTCATGGTTGCATCCTCGTAATCCGCAAGGAATACTATTGTTAGTAACAGTAATCGCATTCCTACT...
Protein
Download Protein FASTA777 aa · LXL04_018491|LXL04_018491|OH1004|PROTEIN
MDHISNEANVDPFSIGPSTTLGRTIAFEVLFCRSISLLRHKIARLLFHYFHSIRTCVSGTVIPVISWLHPRNPQGILLLVTVIAFLLRRCTDLKTRAATASRRKFWRNMMRAAITYEEWSHAAKMLDKETPRTNECHLYDEELVRNKLQELKHRREQGCLRDIIFYMRADLVRNLGNMCNPELHKCRHQVPKLIKSYIDEVSTQLKTVCDSDCEEILLEEKLAFMHETRHAFGRTALLLSGGASLGAFHVGVVKTLVEHK...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_018491 |
|---|---|
| TK1151 ID | TkA08G064040 |
| OH-1004 ID | LXL04_018491 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.600 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_018491 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:13685255-13687740 (+) | |||||||||
| Description | Similar to SDP1: Triacylglycerol lipase SDP1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006071 glycerol metabolic process Biological Process GO:0006641 triglyceride metabolic process Biological Process GO:0006642 triglyceride mobilization Biological Process GO:0006644 phospholipid metabolic process Biological Process GO:0007114 cell budding Biological Process GO:0016042 lipid catabolic process Biological Process GO:0019433 triglyceride catabolic process Biological Process GO:0030435 sporulation resulting in formation of a cellular spore Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005777 peroxisome Cellular Component GO:0005811 lipid droplet Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT3G57140 ath:AT5G04040 sce:YKR089C sce:YOR081C spo:2542205 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF11815.14DUF333699-230 aaPF01734.28Patatin237-415 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_018491 | PF11815.14 | DUF3336 | 99 | 230 | 5.3e-31 | 107.9 |
| LXL04_018491 | PF01734.28 | Patatin | 237 | 415 | 1.3e-19 | 71.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.