Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1797 bp · LXL04_018200|LXL04_018200|OH1004|cDNA
ATGATTCACAGAAAACATCAAACAACAACCACGAAAAATGTGAAGCTTATACAAGCACAAGGTCTGGAAAATAAAGATCTTATTGGGAAATCTGATCCATTTGCGAAGCTGTATATACGCCAATTGCATAGCATGATACAAACCAGCAAAGTTATTGACAATCATTTGAATCCAATTTGGAATGAACATTTCGAGTTCGTAATTGAAGATGCTTCCACCCAAAACTTGACGGTAGAAATTCATGATCAAGACAGGCTTCA...
1797 bp · LXL04_018200|LXL04_018200|OH1004|CDS
ATGATTCACAGAAAACATCAAACAACAACCACGAAAAATGTGAAGCTTATACAAGCACAAGGTCTGGAAAATAAAGATCTTATTGGGAAATCTGATCCATTTGCGAAGCTGTATATACGCCAATTGCATAGCATGATACAAACCAGCAAAGTTATTGACAATCATTTGAATCCAATTTGGAATGAACATTTCGAGTTCGTAATTGAAGATGCTTCCACCCAAAACTTGACGGTAGAAATTCATGATCAAGACAGGCTTCA...
Protein
Download Protein FASTA598 aa · LXL04_018200|LXL04_018200|OH1004|PROTEIN
MIHRKHQTTTTKNVKLIQAQGLENKDLIGKSDPFAKLYIRQLHSMIQTSKVIDNHLNPIWNEHFEFVIEDASTQNLTVEIHDQDRLQTSELIGCAQVKLSELDPGKVKDVWLKLVKDLDVHRDNEDKGNVHLELLYCPDGAGNEFINPFTSNLSMTLLEKVMKDGSGVENGDLVDKKTRVLITKGVLSVTVKSGEDLPPADLMGKADPFVVLTMKKTGNKNKTRVIKENLNPIWNETFDFVVEEGLHDLLIAELWDHDTF...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_018200 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_018200 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:8559068-8568155 (-) | |||||||||
| Description | Similar to SYT5: Synaptotagmin-5 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006869 lipid transport Biological Process GO:0005783 endoplasmic reticulum Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009506 plasmodesma Cellular Component GO:0012505 endomembrane system Cellular Component GO:0033011 perinuclear theca Cellular Component GO:0008289 lipid binding Molecular Function GO:0046872 metal ion binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G05500 ath:AT5G11100 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00168.37C213-114 aaPF00168.37C2185-285 aaPF00168.37C2316-419 aaPF00168.37C2473-574 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_018200 | PF00168.37 | C2 | 13 | 114 | 1.5e-105 | 347.2 |
| LXL04_018200 | PF00168.37 | C2 | 185 | 285 | 1.5e-105 | 347.2 |
| LXL04_018200 | PF00168.37 | C2 | 316 | 419 | 1.5e-105 | 347.2 |
| LXL04_018200 | PF00168.37 | C2 | 473 | 574 | 1.5e-105 | 347.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.