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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp

Gene overview

LXL04_018164
Reference: OH-1004 Chr: Chr04 Coordinates: 7894210-7899454 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

1185 bp · LXL04_018164|LXL04_018164|OH1004|cDNA

atgtcacCACCTCTTTTCCTCATTCAGATTAAACGTGATCCAATGACTGAAATTGAATCTCACAATTTCATATTTTTAATTAGTTTTAAAAgaacatcttttgagaactcatatattcccgagaacccgagaactcccaaaccgttaactttttcgaaaaaccgacttcggggggctaaaaatcgctcaaatataagcccggttgcaaaaaaaaaattccgaaagaacgacttttttttttccaaaaactttgcatatgt...

1185 bp · LXL04_018164|LXL04_018164|OH1004|CDS

ATGTCACCACCTCTTTTCCTCATTCAGATTAAACGTGATCCAATGACTGAAATTGAATCTCACAATTTCATATTTTTAATTAGTTTTAAAAGAACATCTTTTGAGAACTCATATATTCCCGAGAACCCGAGAACTCCCAAACCGTTAACTTTTTCGAAAAACCGACTTCGGGGGGCTAAAAATCGCTCAAATATAAGCCCGGTTGCAAAAAAAAAATTCCGAAAGAACGACTTTTTTTTTTCCAAAAACTTTGCATATGT...

394 aa · LXL04_018164|LXL04_018164|OH1004|PROTEIN

MSPPLFLIQIKRDPMTEIESHNFIFLISFKRTSFENSYIPENPRTPKPLTFSKNRLRGAKNRSNISPVAKKKFRKNDFFFSKNFAYVQTFFVCICAQFFVLFQNRSKTRNFFKFFYRSLYNTYLKRFVKKNLKKNAKKKSCTYAQKIKKSCTYAKVKKKYRFFGNFFQRIVMIKNVLEGSEVGQYTSTSGDHYRDPQDNRCWDLLRTHIFPRTRELPQFPISPKPLFLSKNRLRNPPKRSYKKNLKKFRFSEKKKSFFRK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_018164
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_018164
LocationChr04:7894210-7899454 (+)
DescriptionSimilar to NOA1: NO-associated protein 1, chloroplastic/mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g47450 Exhibits cGTPase activity.

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0104700 Produces nitric oxide (NO) which is a messenger molecule involved in hormonal signaling and defense responses in plant. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018164 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006809 nitric oxide biosynthetic process Biological Process
GO:0006979 response to oxidative stress Biological Process
GO:0009651 response to salt stress Biological Process
GO:0009657 plastid organization Biological Process
GO:0010027 thylakoid membrane organization Biological Process
GO:0010193 response to ozone Biological Process
GO:0010322 regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway Biological Process
GO:0048366 leaf development Biological Process
GO:0051246 regulation of protein metabolic process Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003924 GTPase activity Molecular Function
KEGG gene cross-reference
ath:AT3G47450
dosa:Os02g0104700
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.331
Rank 1 · LXL04_018164 · OH-1004
Cytoplasm0.331
Rank 2 · LXL04_018164 · OH-1004
Mitochondrion0.228
Rank 3 · LXL04_018164 · OH-1004
Plastid0.047
Rank 4 · LXL04_018164 · OH-1004
Cell membrane0.040
Rank 5 · LXL04_018164 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q66GP9Arabidopsis thalianaNO-associated protein 1, chloroplastic/mitochondrial52.439%Swiss-Protweak database homology
Q6YPG5Oryza sativa subsp. japonicaPutative nitric oxide synthase43.902%Swiss-Protweak database homology

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