LXL04_018003 | RubberDandelionOmics

Gene overview

LXL04_018003

Reference: OH-1004 Chr: Chr04 Coordinates: 5003174-5004516 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1263 bp · LXL04_018003|LXL04_018003|OH1004|cDNA

ATGTCAAGCGATGGTGCTTCCGCTCCGATTGGTATTGGCGTTGCTGTTTTTGTCGTTGTTGTTGTGGTAAAGATAGGCATAATTATGTACGTATGCAATAAACGATCCACGATGCACACGGAGAAATTCAATAATGACTGCCGCTTTATTCCGCTCACCATGGTTAAATTTCTCGATGACATGGAAAGAGAAAAACCCATCCGGTTCACCTCTCAACAACTAAGAATCGCGACAGAAAACTTCAGCATCTTGTTAGGTTC...

CDS

Download CDS FASTA

1263 bp · LXL04_018003|LXL04_018003|OH1004|CDS

ATGTCAAGCGATGGTGCTTCCGCTCCGATTGGTATTGGCGTTGCTGTTTTTGTCGTTGTTGTTGTGGTAAAGATAGGCATAATTATGTACGTATGCAATAAACGATCCACGATGCACACGGAGAAATTCAATAATGACTGCCGCTTTATTCCGCTCACCATGGTTAAATTTCTCGATGACATGGAAAGAGAAAAACCCATCCGGTTCACCTCTCAACAACTAAGAATCGCGACAGAAAACTTCAGCATCTTGTTAGGTTC...

Protein

Download Protein FASTA

420 aa · LXL04_018003|LXL04_018003|OH1004|PROTEIN

MSSDGASAPIGIGVAVFVVVVVVKIGIIMYVCNKRSTMHTEKFNNDCRFIPLTMVKFLDDMEREKPIRFTSQQLRIATENFSILLGSGGFGTVYKGLFSNGTSVAVKVLNGTSDKRIEEQFMAEVSTMGRTHHFNLVRLYGFCFESSLRALVYEYMVNGSLDNHLFKASTGPIIGFEQLYEIALGTARGISYLHEECPQRIVHYDIKPGNILLDSKFCAKVADFGLAKLCNRDNTHISMTGGRGTPGYAAPELWLPLPVS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018003`
TK1151 ID	TkA08G033820
OH-1004 ID	LXL04_018003
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	91.300
Protein coverage (%)	TK1151 100.000 / OH-1004 71.190 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_018003

Location Chr04:5003174-5004516 (+)

Description Similar to At1g34300: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g34300`	G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300.	No verified direct reference in this release
`At5g24080`	G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080.	No verified direct reference in this release
`At4g32300`	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5.	No verified direct reference in this release
`At2g19130`	G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018003 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0046777 protein autophosphorylation Biological Process

GO:0048544 recognition of pollen Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005516 calmodulin binding Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0030246 carbohydrate binding Molecular Function

GO:0031625 ubiquitin protein ligase binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G34300

ath:AT2G19130

ath:AT4G32300

ath:AT5G24080

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.810

Rank 1 · LXL04_018003 · OH-1004

Cytoplasm0.137

Rank 2 · LXL04_018003 · OH-1004

Nucleus0.090

Rank 3 · LXL04_018003 · OH-1004

Endoplasmic reticulum0.064

Rank 4 · LXL04_018003 · OH-1004

Golgi apparatus0.029

Rank 5 · LXL04_018003 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714.24PK_Tyr_Ser-Thr84-351 aa

PF00069.32Pkinase84-283 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018003	`PF07714.24`	PK_Tyr_Ser-Thr	84	351	2.1e-46	159.1
LXL04_018003	`PF00069.32`	Pkinase	84	283	8.7e-42	144.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9XID3`	Arabidopsis thaliana	G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300	43.511%	Swiss-Prot	moderate database homology
`Q9FLV4`	Arabidopsis thaliana	G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080	47.811%	Swiss-Prot	moderate database homology
`Q8RWZ5`	Arabidopsis thaliana	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5	44.745%	Swiss-Prot	moderate database homology
`O64477`	Arabidopsis thaliana	G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130	48.123%	Swiss-Prot	moderate database homology

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