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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_017793
Reference: OH-1004 Chr: Chr04 Coordinates: 1322147-1324153 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1308 bp · LXL04_017793|LXL04_017793|OH1004|cDNA

ATGGGTCAGGGGCTTAGTTGCAGAGGAAAAGACGAGCATTGGTTGTTCACAGCCGTGCAGTCAGGCGATTTGGAGACTGTAAGGAGTGTTTTAGAGAGAGATCCGGATCTTATCCGACAAACCACCGTCAATGATCGCCATTCTGCTCTTCACATAGCTGCTGCCAATGGCCGGATCGAGATTGTTTCTATGCTTTTGGACGATCGATTAGTCAATGCCGATTCCTTGAATCGTCATAAACAGACTCCATTGATGCTGGC...

CDS

Download CDS FASTA

1308 bp · LXL04_017793|LXL04_017793|OH1004|CDS

ATGGGTCAGGGGCTTAGTTGCAGAGGAAAAGACGAGCATTGGTTGTTCACAGCCGTGCAGTCAGGCGATTTGGAGACTGTAAGGAGTGTTTTAGAGAGAGATCCGGATCTTATCCGACAAACCACCGTCAATGATCGCCATTCTGCTCTTCACATAGCTGCTGCCAATGGCCGGATCGAGATTGTTTCTATGCTTTTGGACGATCGATTAGTCAATGCCGATTCCTTGAATCGTCATAAACAGACTCCATTGATGCTGGC...

Protein

Download Protein FASTA

435 aa · LXL04_017793|LXL04_017793|OH1004|PROTEIN

MGQGLSCRGKDEHWLFTAVQSGDLETVRSVLERDPDLIRQTTVNDRHSALHIAAANGRIEIVSMLLDDRLVNADSLNRHKQTPLMLAAMHGKISCVQKLIEAGANILVFDSMNGRTCLHYAAFYGHSDCLQTILSAARTSHIAVSWGFSRFVNIRDGKGATPLHLAARQQHPDCVHILLDNGALVCASTGGYSFPGSTPLHLAARGGSIDCIRELLAWGADRLQQDSSGRIPYTVALKHKNEACAALLNPSSPEPLVWPS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_017793
TK1151 IDTkA08G050550
OH-1004 IDLXL04_017793
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_017793
LocationChr04:1322147-1324153 (+)
DescriptionSimilar to XBAT31: Putative E3 ubiquitin-protein ligase XBAT31
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g28840 No E3 ubiquitin-protein ligase activity observed when associated with the E2 enzyme UBC8 in vitro. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os05g0112000 E3 ubiquitin-protein ligase required for full accumulation of the LRR receptor kinase XA21 and XA21-mediated disease resistance. No verified direct reference in this release
Os01g0974400 Probable E3 ubiquitin-protein ligase XBOS31. No verified direct reference in this release
Os08g0258200 Probable E3 ubiquitin-protein ligase XBOS35. No verified direct reference in this release
Os02g0791200 Probable E3 ubiquitin-protein ligase XBOS32. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_017793 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0009408 response to heat Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0051865 protein autoubiquitination Biological Process
GO:0005634 nucleus Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT2G28840
dosa:Os01g0974400
dosa:Os02g0791200
dosa:Os05g0112000
dosa:Os08g0258200
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.599
Rank 1 · LXL04_017793 · OH-1004
Nucleus0.309
Rank 2 · LXL04_017793 · OH-1004
Cell membrane0.171
Rank 3 · LXL04_017793 · OH-1004
Golgi apparatus0.084
Rank 4 · LXL04_017793 · OH-1004
Lysosome / Vacuole0.076
Rank 5 · LXL04_017793 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24521.3Ank_KRIT111-101 aa
PF12796.14Ank_215-109 aa
PF13637.13Ank_415-66 aa
PF13857.13Ank_566-112 aa
PF12796.14Ank_272-135 aa
PF00023.37Ank81-109 aa
PF13637.13Ank_486-132 aa
PF12796.14Ank_2113-185 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_017793PF24521.3Ank_KRIT1111011.1e-1042.1
LXL04_017793PF12796.14Ank_2151098.9e-47158.3
LXL04_017793PF13637.13Ank_415661.3e-2899.1
LXL04_017793PF13857.13Ank_5661124.9e-2897.6
LXL04_017793PF12796.14Ank_2721358.9e-47158.3
LXL04_017793PF00023.37Ank811091e-38129.9
LXL04_017793PF13637.13Ank_4861321.3e-2899.1
LXL04_017793PF12796.14Ank_21131858.9e-47158.3
LXL04_017793PF00023.37Ank1131351e-38129.9
LXL04_017793PF13857.13Ank_51521834.9e-2897.6
LXL04_017793PF00023.37Ank1591881e-38129.9
LXL04_017793PF13606.13Ank_31591831.1e-30102.6
LXL04_017793PF13637.13Ank_41632131.3e-2899.1
LXL04_017793PF12796.14Ank_21962488.9e-47158.3
LXL04_017793PF00023.37Ank1962261e-38129.9
LXL04_017793PF13857.13Ank_51962364.9e-2897.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q94B55Arabidopsis thalianaPutative E3 ubiquitin-protein ligase XBAT3164.176%Swiss-Protstrong database homology
Q65XV2Oryza sativa subsp. japonicaE3 ubiquitin-protein ligase XB362.806%Swiss-Protstrong database homology
Q94CT7Oryza sativa subsp. japonicaProbable E3 ubiquitin-protein ligase XBOS3154.054%Swiss-Protstrong database homology
Q7EZ44Oryza sativa subsp. japonicaProbable E3 ubiquitin-protein ligase XBOS3531.731%Swiss-Protmoderate database homology
Q6KAE5Oryza sativa subsp. japonicaProbable E3 ubiquitin-protein ligase XBOS3231.796%Swiss-Protmoderate database homology

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