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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_017743
Reference: OH-1004 Chr: Chr04 Coordinates: 620366-621691 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1326 bp · LXL04_017743|LXL04_017743|OH1004|cDNA

ATGTCTATTGTTCGGAAGATGTTTTTTAATCCGACTCTCATCCGCCATTATCACAAACAAACATCTCACAAGCCTACCAAAGCTCTCCTCCGGAAACGAATCCCTTTCGTCACCGACCTCAAAGACATTCGAAACCCAGAAGAAGCTCTCGCTCTCTTCCACGATTACTGCGAAACTGGCACTTTTAAGCATGACTACCCTTCTTACTCTTCCCTCATCTACAAACTCGCCCGTAGAAGAAACTACGAAGCAGTCGAAAC...

CDS

Download CDS FASTA

1326 bp · LXL04_017743|LXL04_017743|OH1004|CDS

ATGTCTATTGTTCGGAAGATGTTTTTTAATCCGACTCTCATCCGCCATTATCACAAACAAACATCTCACAAGCCTACCAAAGCTCTCCTCCGGAAACGAATCCCTTTCGTCACCGACCTCAAAGACATTCGAAACCCAGAAGAAGCTCTCGCTCTCTTCCACGATTACTGCGAAACTGGCACTTTTAAGCATGACTACCCTTCTTACTCTTCCCTCATCTACAAACTCGCCCGTAGAAGAAACTACGAAGCAGTCGAAAC...

Protein

Download Protein FASTA

441 aa · LXL04_017743|LXL04_017743|OH1004|PROTEIN

MSIVRKMFFNPTLIRHYHKQTSHKPTKALLRKRIPFVTDLKDIRNPEEALALFHDYCETGTFKHDYPSYSSLIYKLARRRNYEAVETLLQQLQHYNVKCKEALFIGLIQHYGKSRLPDKAIDLFRRMPSFDCYRSLQSLNTILNTLLDNERFTDADEMFKSCSKMGFRPNAVTYNIMIKGWLTKGEWDEARKVFDEMHEKEIEPTVVTYNCQIGFWTKRGKFTEGKNIFNEMIQKGKKPNAISYSLLMECLCSQENFKEA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_017743
TK1151 IDTkA08G053290
OH-1004 IDLXL04_017743
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 27.803 / OH-1004 14.059
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_017743
LocationChr04:620366-621691 (-)
DescriptionSimilar to At1g07740: Pentatricopeptide repeat-containing protein At1g07740, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g07740 Pentatricopeptide repeat-containing protein At1g07740, mitochondrial. No verified direct reference in this release
At5g16420 Pentatricopeptide repeat-containing protein At5g16420, mitochondrial. No verified direct reference in this release
At3g22470 Pentatricopeptide repeat-containing protein At3g22470, mitochondrial. No verified direct reference in this release
At4g20090 May play a role in embryogenesis. No verified direct reference in this release
At5g18475 Pentatricopeptide repeat-containing protein At5g18475. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_017743 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006396 RNA processing Biological Process
GO:0006397 mRNA processing Biological Process
GO:0007005 mitochondrion organization Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G07740
ath:AT5G16420
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.881
Rank 1 · LXL04_017743 · OH-1004
Nucleus0.057
Rank 2 · LXL04_017743 · OH-1004
Plastid0.054
Rank 3 · LXL04_017743 · OH-1004
Cytoplasm0.030
Rank 4 · LXL04_017743 · OH-1004
Cell membrane0.011
Rank 5 · LXL04_017743 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070.1MSC6_N58-195 aa
PF13041.13PPR_2138-180 aa
PF13812.13PPR_3159-216 aa
PF12854.14PPR_1165-197 aa
PF13041.13PPR_2169-211 aa
PF01535.27PPR172-201 aa
PF29070.1MSC6_N186-264 aa
PF13041.13PPR_2204-252 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_017743PF29070.1MSC6_N581951.1e-2074.8
LXL04_017743PF13041.13PPR_21381801.5e-61205.0
LXL04_017743PF13812.13PPR_31592162e-33115.0
LXL04_017743PF12854.14PPR_11651972.7e-52174.9
LXL04_017743PF13041.13PPR_21692111.5e-61205.0
LXL04_017743PF01535.27PPR1722015.4e-49161.8
LXL04_017743PF29070.1MSC6_N1862641.1e-2074.8
LXL04_017743PF13041.13PPR_22042521.5e-61205.0
LXL04_017743PF13812.13PPR_32282842e-33115.0
LXL04_017743PF23276.3TPR_242323321.3e-1661.5
LXL04_017743PF12854.14PPR_12352682.7e-52174.9
LXL04_017743PF13041.13PPR_22432881.5e-61205.0
LXL04_017743PF13812.13PPR_32653202e-33115.0
LXL04_017743PF13041.13PPR_22763121.5e-61205.0
LXL04_017743PF01535.27PPR2783075.4e-49161.8
LXL04_017743PF29070.1MSC6_N2823691.1e-2074.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LQQ1Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g07740, mitochondrial54.673%Swiss-Protstrong database homology
Q9FFE3Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g16420, mitochondrial30.455%Swiss-Protmoderate database homology
Q6NQ83Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g22470, mitochondrial27.551%Swiss-Protweak database homology
O49436Arabidopsis thalianaPentatricopeptide repeat-containing protein At4g2009029.837%Swiss-Protweak database homology
Q3E9F0Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g1847528.837%Swiss-Protweak database homology

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