LXL04_017705 | RubberDandelionOmics

Gene overview

LXL04_017705

Reference: OH-1004 Chr: Chr04 Coordinates: 100236-102075 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1221 bp · LXL04_017705|LXL04_017705|OH1004|cDNA

ATGTTGGATCTTAATCTGATCATCGCTCATCAAGATGAAAAGACGAATTTTCGATCGGAAGTGGAGGAATCAGGCACTTCAAATTCGTCGGTAATGAATGCAGAAGGTTGTAATTCCAATAATGTCGGCGAGGGCGACGACGACTCCGTTTCTGCTACCGGCGATGGAGACAGCTTCCACTGCTTTAATTTCGACATCTTAAAGGTTGGAGATACTGGCGCTCTGCTCAGCAACAGCAACGATGATGGTCGGACGAGTCA...

CDS

Download CDS FASTA

1221 bp · LXL04_017705|LXL04_017705|OH1004|CDS

ATGTTGGATCTTAATCTGATCATCGCTCATCAAGATGAAAAGACGAATTTTCGATCGGAAGTGGAGGAATCAGGCACTTCAAATTCGTCGGTAATGAATGCAGAAGGTTGTAATTCCAATAATGTCGGCGAGGGCGACGACGACTCCGTTTCTGCTACCGGCGATGGAGACAGCTTCCACTGCTTTAATTTCGACATCTTAAAGGTTGGAGATACTGGCGCTCTGCTCAGCAACAGCAACGATGATGGTCGGACGAGTCA...

Protein

Download Protein FASTA

406 aa · LXL04_017705|LXL04_017705|OH1004|PROTEIN

MLDLNLIIAHQDEKTNFRSEVEESGTSNSSVMNAEGCNSNNVGEGDDDSVSATGDGDSFHCFNFDILKVGDTGALLSNSNDDGRTSQTQAQTQAEFVTRPLFPMNQGGGSFNQGQPMNSLMLFPNNIPVQHQKPIVQQNQVAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFNLSDYEDDMNQIGNLSKEEFVHLLRRHSNGFSRGNSKYRGITMNKFGKSE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_017705`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_017705

Location Chr04:100236-102075 (-)

Description Similar to AP2-2: APETALA2-like protein 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g28550`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At5g60120`	Probably acts as a transcriptional activator.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0818800`	Probable transcription factor (By similarity).	Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.2012 · DOI: 10.1111/j.1365-313x.2011.04804.x OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.2016 · DOI: 10.3389/fpls.2016.01891
`UniProt: B8AMA9`	Probable transcription factor (By similarity).	No verified direct reference in this release
`Os06g0639200`	Probable transcription factor (By similarity).	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017705 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0009909 regulation of flower development Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0045824 negative regulation of innate immune response Biological Process

GO:0080050 regulation of seed development Biological Process

GO:1905392 plant organ morphogenesis Biological Process

GO:0005634 nucleus Cellular Component

GO:0001222 transcription corepressor binding Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

ath:AT2G28550

osa:4334582

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.975

Rank 1 · LXL04_017705 · OH-1004

Cytoplasm0.071

Rank 2 · LXL04_017705 · OH-1004

Cell membrane0.024

Rank 3 · LXL04_017705 · OH-1004

Endoplasmic reticulum0.016

Rank 4 · LXL04_017705 · OH-1004

Plastid0.014

Rank 5 · LXL04_017705 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00847.27AP2155-203 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_017705	`PF00847.27`	AP2	155	203	8.6e-10	39.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SK03`	Arabidopsis thaliana	Ethylene-responsive transcription factor RAP2-7	39.827%	Swiss-Prot	moderate database homology
`Q9LVG2`	Arabidopsis thaliana	AP2-like ethylene-responsive transcription factor TOE2	44.681%	Swiss-Prot	moderate database homology
`Q84TB5`	Oryza sativa subsp. japonica	APETALA2-like protein 2	51.587%	Swiss-Prot	moderate database homology
`B8AMA9`	Oryza sativa subsp. indica	APETALA2-like protein 2	51.587%	Swiss-Prot	moderate database homology
`A0A0N7KMH0`	Oryza sativa subsp. japonica	APETALA2-like protein 4	55.932%	Swiss-Prot	weak database homology

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