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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_017642
Reference: OH-1004 Chr: Chr03 Coordinates: 155661611-155664505 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2757 bp · LXL04_017642|LXL04_017642|OH1004|cDNA

ATGGTAAAACCCTTTAAACCCAAATCTCTGTTTGATCTCCGAAAGCACTGCCCCCTGTTGGGTTCTCACACATTTCTCAGATTTTCATCACTACCCAACATTGCCGCCGAGAATAAGAACCATACATACCCAAATCTAGTCAATAACGTCTGTAAAATTCTCTATGATCCTCGTTGGTTTGAAAACAAAGAACTCAAGCATATTAGTCATAAACTCCAGCATATTCATGTTGCCAGAATCGTAAGCTCCCATAAAGACGT...

CDS

Download CDS FASTA

2757 bp · LXL04_017642|LXL04_017642|OH1004|CDS

ATGGTAAAACCCTTTAAACCCAAATCTCTGTTTGATCTCCGAAAGCACTGCCCCCTGTTGGGTTCTCACACATTTCTCAGATTTTCATCACTACCCAACATTGCCGCCGAGAATAAGAACCATACATACCCAAATCTAGTCAATAACGTCTGTAAAATTCTCTATGATCCTCGTTGGTTTGAAAACAAAGAACTCAAGCATATTAGTCATAAACTCCAGCATATTCATGTTGCCAGAATCGTAAGCTCCCATAAAGACGT...

Protein

Download Protein FASTA

918 aa · LXL04_017642|LXL04_017642|OH1004|PROTEIN

MVKPFKPKSLFDLRKHCPLLGSHTFLRFSSLPNIAAENKNHTYPNLVNNVCKILYDPRWFENKELKHISHKLQHIHVARIVSSHKDVDVAIRFFYWLSKNYTYKHDLSSYKAMLTRLVREGQFKDTDNIRVLMVKECKTQEELMKVVDYLNGLKTKGLAYSLYSSNTLLIHMGKFQMIDAARDVFTQMINSGIKPNLSTFNTMISMLCKKGKVQEAASLFDQMLQYDLYPDVFTFNSMILGYCRNRDLETAFRVFNRITK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_017642
TK1151 IDTkA02G019760
OH-1004 IDLXL04_017642
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)96.800
Protein coverage (%)TK1151 99.780 / OH-1004 98.475
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_017642
LocationChr03:155661611-155664505 (+)
DescriptionSimilar to At5g65560: Pentatricopeptide repeat-containing protein At5g65560
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g65560 Pentatricopeptide repeat-containing protein At5g65560. No verified direct reference in this release
At3g07290 Pentatricopeptide repeat-containing protein At3g07290, mitochondrial. No verified direct reference in this release
At3g06920 Pentatricopeptide repeat-containing protein At3g06920. No verified direct reference in this release
At5g12100 Pentatricopeptide repeat-containing protein At5g12100, mitochondrial. No verified direct reference in this release
At1g06710 Pentatricopeptide repeat-containing protein At1g06710, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_017642 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT3G07290
ath:AT5G65560
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.864
Rank 1 · LXL04_017642 · OH-1004
Plastid0.067
Rank 2 · LXL04_017642 · OH-1004
Nucleus0.050
Rank 3 · LXL04_017642 · OH-1004
Cytoplasm0.034
Rank 4 · LXL04_017642 · OH-1004
Cell membrane0.013
Rank 5 · LXL04_017642 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17177.11PPR_long133-254 aa
PF10037.16MRP-S27134-258 aa
PF23276.3TPR_24151-257 aa
PF13812.13PPR_3153-207 aa
PF13041.13PPR_2165-209 aa
PF29070.1MSC6_N176-286 aa
PF12854.14PPR_1192-223 aa
PF13041.13PPR_2195-239 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_017642PF17177.11PPR_long1332542.8e-56190.9
LXL04_017642PF10037.16MRP-S271342582.8e-0730.6
LXL04_017642PF23276.3TPR_241512575.4e-51172.7
LXL04_017642PF13812.13PPR_31532075.8e-91299.3
LXL04_017642PF13041.13PPR_21652095.1e-196635.5
LXL04_017642PF29070.1MSC6_N1762864.5e-44151.8
LXL04_017642PF12854.14PPR_11922233.3e-164532.9
LXL04_017642PF13041.13PPR_21952395.1e-196635.5
LXL04_017642PF01535.27PPR1982266.1e-133424.9
LXL04_017642PF29070.1MSC6_N2143564.5e-44151.8
LXL04_017642PF13812.13PPR_32182755.8e-91299.3
LXL04_017642PF12854.14PPR_12282573.3e-164532.9
LXL04_017642PF13041.13PPR_22302795.1e-196635.5
LXL04_017642PF01535.27PPR2332636.1e-133424.9
LXL04_017642PF17177.11PPR_long2493632.8e-56190.9
LXL04_017642PF23276.3TPR_242543625.4e-51172.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LSL9Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g6556035.782%Swiss-Protmoderate database homology
Q9SFV9Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g07290, mitochondrial31.398%Swiss-Protmoderate database homology
Q9M907Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g0692025.904%Swiss-Protweak database homology
Q9FMQ1Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g12100, mitochondrial28.551%Swiss-Protweak database homology
Q9M9X9Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g06710, mitochondrial26.905%Swiss-Protweak database homology

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