LXL04_017627 | RubberDandelionOmics

Gene overview

LXL04_017627

Reference: OH-1004 Chr: Chr03 Coordinates: 155520765-155521759 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

894 bp · LXL04_017627|LXL04_017627|OH1004|cDNA

ATGATGCAAGCGGGAGATTCTGATCCATCCGAACAAGATACAGAGCAGTTTATCGAGATCGATCCATCAGGAAGATTTGGTCGGTACAGTGACCTCTTAGGCGCTGGTGCAGTCAAAAAAGTCTACAGAGGATTCGATCAAGAAGAAGGCAGAGACATAGCTTGGAACCAAGTCAAGCTAAAAAACTTCAGCGGCGATCCATCTGTCTTAAAGCGATTATTCTCCGAAATCAAGCTCCTCAAAACACTAAACAACGAAAA...

CDS

Download CDS FASTA

894 bp · LXL04_017627|LXL04_017627|OH1004|CDS

ATGATGCAAGCGGGAGATTCTGATCCATCCGAACAAGATACAGAGCAGTTTATCGAGATCGATCCATCAGGAAGATTTGGTCGGTACAGTGACCTCTTAGGCGCTGGTGCAGTCAAAAAAGTCTACAGAGGATTCGATCAAGAAGAAGGCAGAGACATAGCTTGGAACCAAGTCAAGCTAAAAAACTTCAGCGGCGATCCATCTGTCTTAAAGCGATTATTCTCCGAAATCAAGCTCCTCAAAACACTAAACAACGAAAA...

Protein

Download Protein FASTA

297 aa · LXL04_017627|LXL04_017627|OH1004|PROTEIN

MMQAGDSDPSEQDTEQFIEIDPSGRFGRYSDLLGAGAVKKVYRGFDQEEGRDIAWNQVKLKNFSGDPSVLKRLFSEIKLLKTLNNENLIVLYGFWRDTEHNTLNFITEACASGNLRDYRKKHKRVSIKALKKWSRQILKGLEYLHTHDPCVIHRDLNCSNIFINGNIGKVKIGDLGLAAVVGKSHVAHSLIGTPEYMAPELYEEDYNELVDIYSFGMCLLEMATMEIPYTECDCIAKIYKKVTSGMMPDAFNKVNEPELK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_017627`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_017627

Location Chr03:155520765-155521759 (-)

Description Similar to WNK11: Probable serine/threonine-protein kinase WNK11

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g55560`	May regulate flowering time by modulating the photoperiod pathway.	No verified direct reference in this release
`At3g48260`	May regulate flowering time by modulating the photoperiod pathway.	No verified direct reference in this release
`At3g04910`	Regulates flowering time by modulating the photoperiod pathway.	The APRR3 component of the clock-associated APRR1/TOC1 quintet is phosphorylated by a novel protein kinase belonging to the WNK family, the gene for which is also transcribed rhythmically in Arabidopsis thaliana.2002 · DOI: 10.1093/pcp/pcf084 Compilation and characterization of a novel WNK family of protein kinases in Arabiodpsis thaliana with reference to circadian rhythms.2002 · DOI: 10.1271/bbb.66.2429 The plant WNK gene family and regulation of flowering time in Arabidopsis.2008 · DOI: 10.1111/j.1438-8677.2008.00072.x
`At5g28080`	May regulate flowering time by modulating the photoperiod pathway.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0584100`	Probable serine/threonine-protein kinase WNK5.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017627 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT3G04910

ath:AT3G48260

ath:AT5G28080

ath:AT5G55560

dosa:Os07g0584100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.580

Rank 1 · LXL04_017627 · OH-1004

Nucleus0.546

Rank 2 · LXL04_017627 · OH-1004

Cell membrane0.089

Rank 3 · LXL04_017627 · OH-1004

Mitochondrion0.052

Rank 4 · LXL04_017627 · OH-1004

Endoplasmic reticulum0.043

Rank 5 · LXL04_017627 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase31-285 aa

PF07714.24PK_Tyr_Ser-Thr31-281 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_017627	`PF00069.32`	Pkinase	31	285	1.6e-49	169.4
LXL04_017627	`PF07714.24`	PK_Tyr_Ser-Thr	31	281	1.2e-35	123.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q6ICW6`	Arabidopsis thaliana	Probable serine/threonine-protein kinase WNK11	68.858%	Swiss-Prot	strong database homology
`Q9STK6`	Arabidopsis thaliana	Probable serine/threonine-protein kinase WNK3	62.731%	Swiss-Prot	strong database homology
`Q9CAV6`	Arabidopsis thaliana	Serine/threonine-protein kinase WNK1	60.563%	Swiss-Prot	strong database homology
`Q2V338`	Arabidopsis thaliana	Probable serine/threonine-protein kinase WNK9	58.909%	Swiss-Prot	strong database homology
`Q0D541`	Oryza sativa subsp. japonica	Probable serine/threonine-protein kinase WNK5	61.511%	Swiss-Prot	strong database homology

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