LXL04_017595 | RubberDandelionOmics

Gene overview

LXL04_017595

Reference: OH-1004 Chr: Chr03 Coordinates: 154520273-154520852 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

402 bp · LXL04_017595|LXL04_017595|OH1004|cDNA

ATGGCAAAAGTGCTCATCTTcatttctttcttctttttatcTCTCACCTCTCTCGTATCTTCAATCGAAGTAAATTCAGCAAATTATGAGGAATTGGTTATGAAAAGCAAAGATAAGTGGATGATCCAGTTCGGGATACCTTGGTGTGGAGCCGTTAAAGCCCTTGTACCTGAATGGGAGAAGGCTTCCAAGAGTTTGGAAGGAAAGGTCAAGCTTGGTGAAGTAAATTGTGACAAGAACCATGATTTATCGGAAAAGTT...

CDS

Download CDS FASTA

402 bp · LXL04_017595|LXL04_017595|OH1004|CDS

ATGGCAAAAGTGCTCATCTTCATTTCTTTCTTCTTTTTATCTCTCACCTCTCTCGTATCTTCAATCGAAGTAAATTCAGCAAATTATGAGGAATTGGTTATGAAAAGCAAAGATAAGTGGATGATCCAGTTCGGGATACCTTGGTGTGGAGCCGTTAAAGCCCTTGTACCTGAATGGGAGAAGGCTTCCAAGAGTTTGGAAGGAAAGGTCAAGCTTGGTGAAGTAAATTGTGACAAGAACCATGATTTATCGGAAAAGTT...

Protein

Download Protein FASTA

133 aa · LXL04_017595|LXL04_017595|OH1004|PROTEIN

MAKVLIFISFFFLSLTSLVSSIEVNSANYEELVMKSKDKWMIQFGIPWCGAVKALVPEWEKASKSLEGKVKLGEVNCDKNHDLSEKFKIASFPTIIAFSGDKTKQPFLYQGQRTAAAIEETALADWSQYEAKS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_017595`
TK1151 ID	TkA02G022410
OH-1004 ID	LXL04_017595
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_017595

Location Chr03:154520273-154520852 (+)

Description Similar to PDIL2-3: Protein disulfide isomerase-like 2-3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g04980`	Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.	No verified direct reference in this release
`At2g32920`	Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0451500`	Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017595 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0034976 response to endoplasmic reticulum stress Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005788 endoplasmic reticulum lumen Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0003756 protein disulfide isomerase activity Molecular Function

GO:0015035 protein-disulfide reductase activity Molecular Function

KEGG gene cross-reference

ath:AT1G04980

ath:AT2G32920

dosa:Os09g0451500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.609

Rank 1 · LXL04_017595 · OH-1004

Lysosome / Vacuole0.175

Rank 2 · LXL04_017595 · OH-1004

Cytoplasm0.130

Rank 3 · LXL04_017595 · OH-1004

Extracellular0.104

Rank 4 · LXL04_017595 · OH-1004

Golgi apparatus0.059

Rank 5 · LXL04_017595 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00085.27Thioredoxin22-121 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_017595	`PF00085.27`	Thioredoxin	22	121	9e-22	77.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9MAU6`	Arabidopsis thaliana	Protein disulfide-isomerase like 2-2	50.962%	Swiss-Prot	strong database homology
`O48773`	Arabidopsis thaliana	Protein disulfide-isomerase 2-3	47.573%	Swiss-Prot	moderate database homology
`Q67UF5`	Oryza sativa subsp. japonica	Protein disulfide isomerase-like 2-3	53.704%	Swiss-Prot	strong database homology

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