LXL04_017560 | RubberDandelionOmics

Gene overview

LXL04_017560

Reference: OH-1004 Chr: Chr03 Coordinates: 153239521-153244167 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1617 bp · LXL04_017560|LXL04_017560|OH1004|cDNA

ATGCTCATCAAATGCGGTGCTTTATTCTTCCTTTCGTCATATATTGCTCACTACACACGCCTCCGTCATCGTTTCTCTCAAATCTCAGTGTTCAACATGGGTACGTCAATCAAAGCAAGTGTGCTTGCCTTGTGTTTGCTGTTTCTTCTATCAGCTTCAGCAAATTCAGCCTCTAATGGTGGATTAATAAGAGTTGGGCTTAAGAAAAGGAAGGTGGACCAACTTAACCAAATCAATGGACATGGTGTGTCCACACAAGG...

CDS

Download CDS FASTA

1617 bp · LXL04_017560|LXL04_017560|OH1004|CDS

ATGCTCATCAAATGCGGTGCTTTATTCTTCCTTTCGTCATATATTGCTCACTACACACGCCTCCGTCATCGTTTCTCTCAAATCTCAGTGTTCAACATGGGTACGTCAATCAAAGCAAGTGTGCTTGCCTTGTGTTTGCTGTTTCTTCTATCAGCTTCAGCAAATTCAGCCTCTAATGGTGGATTAATAAGAGTTGGGCTTAAGAAAAGGAAGGTGGACCAACTTAACCAAATCAATGGACATGGTGTGTCCACACAAGG...

Protein

Download Protein FASTA

538 aa · LXL04_017560|LXL04_017560|OH1004|PROTEIN

MLIKCGALFFLSSYIAHYTRLRHRFSQISVFNMGTSIKASVLALCLLFLLSASANSASNGGLIRVGLKKRKVDQLNQINGHGVSTQGNVRRNFGLESPLIDSDTDIIELKNYMDAQYYGEIGIGSPPQMFTVIFDTGSSNLWVPSAKCYFSVACLFHSKYKASHSSTYKKNGTSAAIQYGTGAISGFFSQDSVQLGDLVVKEQDFIEATKEPGITFLAAKFDGIFGLGFQEISVGNAVPVWYNMVNQGLIPEPVFSFWFN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_017560`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_017560

Location Chr03:153239521-153244167 (-)

Description Similar to CYPRO1: Cyprosin (Fragment)

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g11910`	Involved in the breakdown of propeptides of storage proteins in protein-storage vacuoles (By similarity).	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0567100`	Involved in the breakdown of propeptides of storage proteins in protein-storage vacuoles.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017560 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0006629 lipid metabolic process Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0000326 protein storage vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005773 vacuole Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0099503 secretory vesicle Cellular Component

GO:0004175 endopeptidase activity Molecular Function

GO:0004190 aspartic-type endopeptidase activity Molecular Function

KEGG gene cross-reference

ath:AT1G11910

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.550

Rank 1 · LXL04_017560 · OH-1004

Extracellular0.225

Rank 2 · LXL04_017560 · OH-1004

Cytoplasm0.175

Rank 3 · LXL04_017560 · OH-1004

Endoplasmic reticulum0.118

Rank 4 · LXL04_017560 · OH-1004

Cell membrane0.116

Rank 5 · LXL04_017560 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00026.29Asp116-537 aa

PF14543.12TAXi_N117-275 aa

PF03489.23SapB_2350-383 aa

PF05184.21SapB_1411-447 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_017560	`PF00026.29`	Asp	116	537	8e-117	390.9
LXL04_017560	`PF14543.12`	TAXi_N	117	275	5e-11	43.8
LXL04_017560	`PF03489.23`	SapB_2	350	383	2.3e-12	47.5
LXL04_017560	`PF05184.21`	SapB_1	411	447	2.1e-14	53.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O65390`	Arabidopsis thaliana	Aspartic proteinase A1	70.693%	Swiss-Prot	strong database homology
`Q42456`	Oryza sativa subsp. japonica	Aspartic proteinase oryzasin-1	68.041%	Swiss-Prot	strong database homology

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