LXL04_017469 | RubberDandelionOmics

Gene overview

LXL04_017469

Reference: OH-1004 Chr: Chr03 Coordinates: 149791594-149794852 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1701 bp · LXL04_017469|LXL04_017469|OH1004|cDNA

ATGCCCACAGACTACGATTATTCTGATAACAACAACGACAACAAcaataataacaacaacaacgataACAACGACGACGACAACGacaacaacaacaaaaacaacaacaacaacaacaacaacaacgtcaacaacaataacaacaagaacaacgacaacaacaacaaaaacaacaaaaacaacaacaacGGGAATCAAAACTCTCCACCGCCGCCACCGCCTccgccaccaccacctcctcctcctccccCACCACCATT...

CDS

Download CDS FASTA

1701 bp · LXL04_017469|LXL04_017469|OH1004|CDS

ATGCCCACAGACTACGATTATTCTGATAACAACAACGACAACAACAATAATAACAACAACAACGATAACAACGACGACGACAACGACAACAACAACAAAAACAACAACAACAACAACAACAACAACGTCAACAACAATAACAACAAGAACAACGACAACAACAACAAAAACAACAAAAACAACAACAACGGGAATCAAAACTCTCCACCGCCGCCACCGCCTCCGCCACCACCACCTCCTCCTCCTCCCCCACCACCATT...

Protein

Download Protein FASTA

566 aa · LXL04_017469|LXL04_017469|OH1004|PROTEIN

MPTDYDYSDNNNDNNNNNNNNDNNDDDNDNNNKNNNNNNNNNVNNNNNKNNDNNNKNNKNNNNGNQNSPPPPPPPPPPPPPPPPPPLGPPQAPLRHKFAPPHPHPRSSSDVNDTGNDILIVVGGVVAAGVLFFIMTLCVMACLKKRKRKRQDEINAYQSQPPNDIHLKMPPPPNSGPASSEHGWVAVPPPPPPPMSEEFSTASFSGPFQPPMPPPHPGVVLGFNKSTFTYDELAAATRGFHSSLLLGEGGFGYVYKGTLP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_017469`
TK1151 ID	TkA02G042230
OH-1004 ID	LXL04_017469
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	94.900
Protein coverage (%)	TK1151 79.221 / OH-1004 84.806 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_017469

Location Chr03:149791594-149794852 (+)

Description Similar to PERK1: Proline-rich receptor-like protein kinase PERK1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g24550`	Proline-rich receptor-like protein kinase PERK1.	No verified direct reference in this release
`At2g18470`	Required during abscisic acid (ABA)-mediated activation of Ca(2+) channels.	Plasma membrane-associated proline-rich extensin-like receptor kinase 4, a novel regulator of Ca signalling, is required for abscisic acid responses in Arabidopsis thaliana.2009 · DOI: 10.1111/j.1365-313x.2009.03956.x Arabidopsis proline-rich extensin-like receptor kinase 4 modulates the early event toward abscisic acid response in root tip growth.2009 · DOI: 10.4161/psb.4.11.9739
`At1g49270`	Proline-rich receptor-like protein kinase PERK7.	No verified direct reference in this release
`At4g34440`	Proline-rich receptor-like protein kinase PERK5.	No verified direct reference in this release
`At3g24540`	Proline-rich receptor-like protein kinase PERK3.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017469 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009611 response to wounding Biological Process

GO:0009620 response to fungus Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009845 seed germination Biological Process

GO:0019722 calcium-mediated signaling Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0048364 root development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0090406 pollen tube Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G49270

ath:AT2G18470

ath:AT3G24550

ath:AT4G34440

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.863

Rank 1 · LXL04_017469 · OH-1004

Cytoplasm0.103

Rank 2 · LXL04_017469 · OH-1004

Nucleus0.080

Rank 3 · LXL04_017469 · OH-1004

Endoplasmic reticulum0.062

Rank 4 · LXL04_017469 · OH-1004

Golgi apparatus0.020

Rank 5 · LXL04_017469 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase243-509 aa

PF07714.24PK_Tyr_Ser-Thr245-512 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_017469	`PF00069.32`	Pkinase	243	509	1.1e-42	146.9
LXL04_017469	`PF07714.24`	PK_Tyr_Ser-Thr	245	512	4.8e-45	154.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LV48`	Arabidopsis thaliana	Proline-rich receptor-like protein kinase PERK1	54.781%	Swiss-Prot	strong database homology
`Q9ZNQ8`	Arabidopsis thaliana	Proline-rich receptor-like protein kinase PERK4	61.060%	Swiss-Prot	strong database homology
`Q9XI96`	Arabidopsis thaliana	Proline-rich receptor-like protein kinase PERK7	56.033%	Swiss-Prot	strong database homology
`Q8GX23`	Arabidopsis thaliana	Proline-rich receptor-like protein kinase PERK5	56.132%	Swiss-Prot	moderate database homology
`Q1PEM5`	Arabidopsis thaliana	Proline-rich receptor-like protein kinase PERK3	51.050%	Swiss-Prot	strong database homology

JBrowse

View in Genome Browser

Gene Card