Gene Card
Gene overview
cDNA / CDS / Protein Sequences
438 bp · LXL04_017397|LXL04_017397|OH1004|cDNA
ATGGCTGCAGCGCGACCAAATTCCGTCCAATGCTTCGGCAGAAAGAAGACGGCGGTAGCCGTCACTCACTGCAAAGCTGGCCGTGGCCTGATCAAAATCAACGGAGTTCCGATCGAACTCATTCAGCCGGAGATCCTCCGTTACAAGGCGTTTGAGCCGATCCTCCTTCTCGGTCGCCACAAGTTCGCCGGCGTAGATATGAGGGTTCGTGTAAAAGGTGGAGGTCACACCTCCCAGATCTACGCTATTCGTCAAAGCAT...
438 bp · LXL04_017397|LXL04_017397|OH1004|CDS
ATGGCTGCAGCGCGACCAAATTCCGTCCAATGCTTCGGCAGAAAGAAGACGGCGGTAGCCGTCACTCACTGCAAAGCTGGCCGTGGCCTGATCAAAATCAACGGAGTTCCGATCGAACTCATTCAGCCGGAGATCCTCCGTTACAAGGCGTTTGAGCCGATCCTCCTTCTCGGTCGCCACAAGTTCGCCGGCGTAGATATGAGGGTTCGTGTAAAAGGTGGAGGTCACACCTCCCAGATCTACGCTATTCGTCAAAGCAT...
Protein
Download Protein FASTA145 aa · LXL04_017397|LXL04_017397|OH1004|PROTEIN
MAAARPNSVQCFGRKKTAVAVTHCKAGRGLIKINGVPIELIQPEILRYKAFEPILLLGRHKFAGVDMRVRVKGGGHTSQIYAIRQSIAKALVAYYQKFFDEEQKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_017397 |
|---|---|
| TK1151 ID | TkA08G178930 |
| OH-1004 ID | LXL04_017397 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 98.600 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_017397 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:148258467-148258904 (-) | |||||||||
| Description | Similar to RPS16: 40S ribosomal protein S16 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process GO:0006412 translation Biological Process GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0009505 plant-type cell wall Cellular Component GO:0009506 plasmodesma Cellular Component GO:0009507 chloroplast Cellular Component GO:0009536 plastid Cellular Component GO:0022626 cytosolic ribosome Cellular Component GO:0022627 cytosolic small ribosomal subunit Cellular Component GO:0003723 RNA binding Molecular Function GO:0003729 mRNA binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT2G09990 ath:AT5G18380 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00380.26Ribosomal_S913-145 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_017397 | PF00380.26 | Ribosomal_S9 | 13 | 145 | 3.2e-38 | 131.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.