LXL04_017057 | RubberDandelionOmics

Gene overview

LXL04_017057

Reference: OH-1004 Chr: Chr03 Coordinates: 140253323-140257501 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1830 bp · LXL04_017057|LXL04_017057|OH1004|cDNA

ATGAGAATCTTGGCTTTTAGCTTGCAAGAAATGGATAAGACCCTCCCTCGGATCCTCTGTTGGTTTATTTTTGGTTTCTATAATTTGTCAAGTGTTTATGGGAATGAAGTTGAAGCATTGACTGCCCTGAAGGCCCAATTACATGATTATGATTCTAGTGTTTTGCAAAGTTGGGATCCGGCCCTTTCCATTCCATGTACTTGGTTTCATGTTACTTGCGACAATGAGAATAAAGTTATTCGAATTGATCTTGGAAACGC...

CDS

Download CDS FASTA

1830 bp · LXL04_017057|LXL04_017057|OH1004|CDS

ATGAGAATCTTGGCTTTTAGCTTGCAAGAAATGGATAAGACCCTCCCTCGGATCCTCTGTTGGTTTATTTTTGGTTTCTATAATTTGTCAAGTGTTTATGGGAATGAAGTTGAAGCATTGACTGCCCTGAAGGCCCAATTACATGATTATGATTCTAGTGTTTTGCAAAGTTGGGATCCGGCCCTTTCCATTCCATGTACTTGGTTTCATGTTACTTGCGACAATGAGAATAAAGTTATTCGAATTGATCTTGGAAACGC...

Protein

Download Protein FASTA

609 aa · LXL04_017057|LXL04_017057|OH1004|PROTEIN

MRILAFSLQEMDKTLPRILCWFIFGFYNLSSVYGNEVEALTALKAQLHDYDSSVLQSWDPALSIPCTWFHVTCDNENKVIRIDLGNAGLSGQLVPELGQLTNLQYLELYSNNITGKIPYELGNLTNLVSLDLYLNQLDGDIPDTLGKLHKLRYLRLNDNNLTGTIPNSLTTIDELQILDLSNTFLKGDVPFNGSFVRFTPISFNNTNVTFPQDTTPPYSPSPSAGNNIGAIAGGVATGAALLTAIALSWWRHRNSQYHFS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_017057`
TK1151 ID	TkA02G077750
OH-1004 ID	LXL04_017057
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_017057

Location Chr03:140253323-140257501 (+)

Description Similar to BAK1: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g33430`	Dual specificity kinase acting on both serine/threonine- and tyrosine-containing substrates.	The BRI1-associated kinase 1, BAK1, has a brassinolide-independent role in plant cell-death control.2007 · DOI: 10.1016/j.cub.2007.05.046 BAK1 and BKK1 regulate brassinosteroid-dependent growth and brassinosteroid-independent cell-death pathways.2007 · DOI: 10.1016/j.cub.2007.05.036 Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR KINASE proteins serve brassinosteroid-dependent and -independent signaling pathways.2008 · DOI: 10.1104/pp.108.123216 Tyrosine phosphorylation of the BRI1 receptor kinase emerges as a component of brassinosteroid signaling in Arabidopsis.2009 · DOI: 10.1073/pnas.0810249106 Phosphorylation of receptor-like cytoplasmic kinases by bacterial flagellin.2010 · DOI: 10.4161/psb.11500 The Arabidopsis leucine-rich repeat receptor-like kinases BAK1/SERK3 and BKK1/SERK4 are required for innate immunity to hemibiotrophic and biotrophic pathogens.2011 · DOI: 10.1105/tpc.111.084301 Structure of the pseudokinase domain of BIR2, a regulator of BAK1-mediated immune signaling in Arabidopsis.2014 · DOI: 10.1016/j.jsb.2014.02.005 Phytosulfokine Regulates Growth in Arabidopsis through a Response Module at the Plasma Membrane That Includes CYCLIC NUCLEOTIDE-GATED CHANNEL17, H+-ATPase, and BAK1.2015 · DOI: 10.1105/tpc.15.00306 An RLP23-SOBIR1-BAK1 complex mediates NLP-triggered immunity.2015 · DOI: 10.1038/nplants.2015.140 The SCOOP12 peptide regulates defense response and root elongation in Arabidopsis thaliana.2019 · DOI: 10.1093/jxb/ery454 The Arabidopsis MIK2 receptor elicits immunity by sensing a conserved signature from phytocytokines and microbes.2021 · DOI: 10.1038/s41467-021-25580-w
`At1g71830`	Dual specificity kinase acting on both serine/threonine- and tyrosine-containing substrates.	Role of threonines in the Arabidopsis thaliana somatic embryogenesis receptor kinase 1 activation loop in phosphorylation.2001 · DOI: 10.1074/jbc.m102381200 In vivo hexamerization and characterization of the Arabidopsis AAA ATPase CDC48A complex using forster resonance energy transfer-fluorescence lifetime imaging microscopy and fluorescence correlation spectroscopy.2007 · DOI: 10.1104/pp.107.103986

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: B8BB68`	LRR receptor kinase involved in defense response.	No verified direct reference in this release
`Os08g0174700`	LRR receptor kinase involved in defense response.	Engineering OsBAK1 gene as a molecular tool to improve rice architecture for high yield.2009 · DOI: 10.1111/j.1467-7652.2009.00444.x A subset of OsSERK genes, including OsBAK1, affects normal growth and leaf development of rice.2011 · DOI: 10.1007/s10059-011-0178-4
`Os04g0457800`	LRR receptor kinase involved in positive regulation of somatic embryogenesis and defense response against the rice blast fungus pathogen Magnaporthe oryzae.	Rice SERK1 gene positively regulates somatic embryogenesis of cultured cell and host defense response against fungal infection.2005 · DOI: 10.1007/s00425-005-1534-4 An XA21-associated kinase (OsSERK2) regulates immunity mediated by the XA21 and XA3 immune receptors.2014 · DOI: 10.1093/mp/ssu003

Functional annotation source

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Functional annotation source: OH1004 · LXL04_017057 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002229 defense response to oomycetes Biological Process

GO:0006468 protein phosphorylation Biological Process

GO:0006952 defense response Biological Process

GO:0007030 Golgi organization Biological Process

GO:0009556 microsporogenesis Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0010152 pollen maturation Biological Process

GO:0010227 floral organ abscission Biological Process

GO:0010262 somatic embryogenesis Biological Process

GO:0030154 cell differentiation Biological Process

KEGG gene cross-reference

ath:AT1G71830

ath:AT4G33430

dosa:Os04g0457800

dosa:Os08g0174700

osa:4336035

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.868

Rank 1 · LXL04_017057 · OH-1004

Endoplasmic reticulum0.083

Rank 2 · LXL04_017057 · OH-1004

Cytoplasm0.075

Rank 3 · LXL04_017057 · OH-1004

Nucleus0.048

Rank 4 · LXL04_017057 · OH-1004

Lysosome / Vacuole0.026

Rank 5 · LXL04_017057 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263.18LRRNT_235-74 aa

PF23598.2LRR_1489-181 aa

PF12799.14LRR_4101-140 aa

PF13855.13LRR_8139-183 aa

PF00069.32Pkinase292-559 aa

PF07714.24PK_Tyr_Ser-Thr293-563 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_017057	`PF08263.18`	LRRNT_2	35	74	2.3e-09	38.1
LXL04_017057	`PF23598.2`	LRR_14	89	181	2.1e-10	40.6
LXL04_017057	`PF12799.14`	LRR_4	101	140	3.6e-09	37.3
LXL04_017057	`PF13855.13`	LRR_8	139	183	3.1e-09	37.2
LXL04_017057	`PF00069.32`	Pkinase	292	559	5.8e-40	138.1
LXL04_017057	`PF07714.24`	PK_Tyr_Ser-Thr	293	563	5.4e-42	144.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q94F62`	Arabidopsis thaliana	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1	68.482%	Swiss-Prot	strong database homology
`Q94AG2`	Arabidopsis thaliana	Somatic embryogenesis receptor kinase 1	67.613%	Swiss-Prot	strong database homology
`B8BB68`	Oryza sativa subsp. indica	LRR receptor kinase BAK1	67.095%	Swiss-Prot	strong database homology
`Q6Z4U4`	Oryza sativa subsp. japonica	LRR receptor kinase BAK1	68.781%	Swiss-Prot	strong database homology
`Q7XV05`	Oryza sativa subsp. japonica	LRR receptor kinase SERK2	67.391%	Swiss-Prot	strong database homology

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