LXL04_016952 | RubberDandelionOmics

Gene overview

LXL04_016952

Reference: OH-1004 Chr: Chr03 Coordinates: 137451789-137454829 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1710 bp · LXL04_016952|LXL04_016952|OH1004|cDNA

ATGGCGCTTAAGCTTCCAGCCGATGGAGTTCCAGATGCCGCGTTTCAGTCGATTGGATGTGGTTATGATATCTCGCTAGATCTGAAGCTTAAGTATTGCAAAGGTGCTGATTTTGATACTAATCCATATCGAATGTGTCGTTTGATCGAAATGGACGAGGATGAAGGTAGAGACATCATGCTTGCTGGTGGGATTCTAATCAATAATGTTCCCGAATCCATCAAATGTGATAAAGGCGAGCATATTCGATTTCAGTCTGG...

CDS

Download CDS FASTA

1710 bp · LXL04_016952|LXL04_016952|OH1004|CDS

ATGGCGCTTAAGCTTCCAGCCGATGGAGTTCCAGATGCCGCGTTTCAGTCGATTGGATGTGGTTATGATATCTCGCTAGATCTGAAGCTTAAGTATTGCAAAGGTGCTGATTTTGATACTAATCCATATCGAATGTGTCGTTTGATCGAAATGGACGAGGATGAAGGTAGAGACATCATGCTTGCTGGTGGGATTCTAATCAATAATGTTCCCGAATCCATCAAATGTGATAAAGGCGAGCATATTCGATTTCAGTCTGG...

Protein

Download Protein FASTA

569 aa · LXL04_016952|LXL04_016952|OH1004|PROTEIN

MALKLPADGVPDAAFQSIGCGYDISLDLKLKYCKGADFDTNPYRMCRLIEMDEDEGRDIMLAGGILINNVPESIKCDKGEHIRFQSGVLSFQQMSEQFNRELSLDGNIPSGHFNAMFNFDGNWQKNASITKTLAFDGVFIYLYTIALERSRILLCDYVKSDVPSSWDPPLLARFIEKYGTHIIVGVKMGGKDVIYMKQHHTSSVEPADVEELLNKLADKRFLDFDEQSIIDSGHIPQNDMLKDVVSISTRRGGSSDGNLK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_016952`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_016952

Location Chr03:137451789-137454829 (-)

Description Similar to At4g24290: MACPF domain-containing protein At4g24290

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g24290`	Negatively controls the salicylic acid (SA)-mediated pathway of programmed cell death in plant immunity.	No verified direct reference in this release
`At1g28380`	Negatively controls the salicylic acid (SA)-mediated pathway of programmed cell death in plant immunity.	Loss of Necrotic Spotted Lesions 1 associates with cell death and defense responses in Arabidopsis thaliana.2006 · DOI: 10.1007/s11103-006-9001-6
`At1g29690`	Negatively controls the salicylic acid (SA)-mediated pathway of programmed cell death in plant immunity.	No verified direct reference in this release
`At1g14780`	Negatively controls the salicylic acid (SA)-mediated pathway of programmed cell death in plant immunity.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016952 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006955 immune response Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0009651 response to salt stress Biological Process

GO:0010337 regulation of salicylic acid metabolic process Biological Process

GO:0012501 programmed cell death Biological Process

GO:0052542 defense response by callose deposition Biological Process

GO:0072708 response to sorbitol Biological Process

GO:2000031 regulation of salicylic acid mediated signaling pathway Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT1G14780

ath:AT1G28380

ath:AT1G29690

ath:AT4G24290

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.253

Rank 1 · LXL04_016952 · OH-1004

Cell membrane0.187

Rank 2 · LXL04_016952 · OH-1004

Nucleus0.171

Rank 3 · LXL04_016952 · OH-1004

Plastid0.123

Rank 4 · LXL04_016952 · OH-1004

Extracellular0.122

Rank 5 · LXL04_016952 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01823.26MACPF15-306 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_016952	`PF01823.26`	MACPF	15	306	1.9e-30	107.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9STW5`	Arabidopsis thaliana	MACPF domain-containing protein At4g24290	56.033%	Swiss-Prot	strong database homology
`Q9SGN6`	Arabidopsis thaliana	MACPF domain-containing protein NSL1	44.698%	Swiss-Prot	moderate database homology
`Q9C7N2`	Arabidopsis thaliana	MACPF domain-containing protein CAD1	43.116%	Swiss-Prot	moderate database homology
`Q8L612`	Arabidopsis thaliana	MACPF domain-containing protein At1g14780	38.325%	Swiss-Prot	moderate database homology

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