LXL04_016913 | RubberDandelionOmics

Gene overview

LXL04_016913

Reference: OH-1004 Chr: Chr03 Coordinates: 136794103-136794840 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

738 bp · LXL04_016913|LXL04_016913|OH1004|cDNA

ATGTCATCTTCAAACTATACTCTCATCGTTTGTGCTCTTTTCGTCCTTCAATTTCTCCAAATGGTTATAGGGGATAATAATGGTCCACTCTACCACATTTGTTCCACTACTTCAGGCAACTTTACTCCCTATAGTCCATACGAACATAGCCTCAAGAAACTCATGGGAGAGTTACAATACAAAACCCCTCCAAATGGCTTTGGAATGGGATCCGTGGGGCAATACGAAGCTCATACCTCCGGTCTTTCCCTTTGTCGGGG...

CDS

Download CDS FASTA

738 bp · LXL04_016913|LXL04_016913|OH1004|CDS

ATGTCATCTTCAAACTATACTCTCATCGTTTGTGCTCTTTTCGTCCTTCAATTTCTCCAAATGGTTATAGGGGATAATAATGGTCCACTCTACCACATTTGTTCCACTACTTCAGGCAACTTTACTCCCTATAGTCCATACGAACATAGCCTCAAGAAACTCATGGGAGAGTTACAATACAAAACCCCTCCAAATGGCTTTGGAATGGGATCCGTGGGGCAATACGAAGCTCATACCTCCGGTCTTTCCCTTTGTCGGGG...

Protein

Download Protein FASTA

245 aa · LXL04_016913|LXL04_016913|OH1004|PROTEIN

MSSSNYTLIVCALFVLQFLQMVIGDNNGPLYHICSTTSGNFTPYSPYEHSLKKLMGELQYKTPPNGFGMGSVGQYEAHTSGLSLCRGDVTPKDCMACVVNASAEILKRCPNNKAGTIWYDRCLLKYSGNEFLGKIDNQNRVYMWNLNNVSDPRSFNVETRRLLSGLVSTAYGDPKMYANGVRDVEGSQKIYGLVQCTRDLSSGDCKSCLEGAIGQLPNCCDGKRGGRVLSGSCNIRYEIYPFVGV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_016913`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_016913

Location Chr03:136794103-136794840 (-)

Description Similar to CRRSP38: Cysteine-rich repeat secretory protein 38

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g22060`	Cysteine-rich repeat secretory protein 38.	No verified direct reference in this release
`At3g58310`	Putative cysteine-rich repeat secretory protein 61.	No verified direct reference in this release
`At3g21937`	Putative cysteine-rich repeat secretory protein 21.	No verified direct reference in this release
`At3g21960`	Putative cysteine-rich repeat secretory protein 24.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016913 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002229 defense response to oomycetes Biological Process

GO:0002239 response to oomycetes Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0099503 secretory vesicle Cellular Component

KEGG gene cross-reference

ath:AT3G21960

ath:AT3G22060

ath:AT3G58310

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.646

Rank 1 · LXL04_016913 · OH-1004

Extracellular0.196

Rank 2 · LXL04_016913 · OH-1004

Cytoplasm0.076

Rank 3 · LXL04_016913 · OH-1004

Endoplasmic reticulum0.070

Rank 4 · LXL04_016913 · OH-1004

Lysosome / Vacuole0.033

Rank 5 · LXL04_016913 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01657.23Stress-antifung34-127 aa

PF01657.23Stress-antifung148-239 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_016913	`PF01657.23`	Stress-antifung	34	127	2.1e-38	131.7
LXL04_016913	`PF01657.23`	Stress-antifung	148	239	2.1e-38	131.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LRJ9`	Arabidopsis thaliana	Cysteine-rich repeat secretory protein 38	49.793%	Swiss-Prot	moderate database homology
`Q9M2I5`	Arabidopsis thaliana	Putative cysteine-rich repeat secretory protein 61	42.562%	Swiss-Prot	moderate database homology
`Q9LRL8`	Arabidopsis thaliana	Putative cysteine-rich repeat secretory protein 21	40.323%	Swiss-Prot	moderate database homology
`Q9LRL4`	Arabidopsis thaliana	Putative cysteine-rich repeat secretory protein 24	40.260%	Swiss-Prot	moderate database homology

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