Gene Card
Gene overview
cDNA / CDS / Protein Sequences
690 bp · LXL04_016881|LXL04_016881|OH1004|cDNA
ATGCCGAAATCCAAGAGAGACAGAGCAGTAACGTTGTCAAAGACAAAGAAGAAAGGAAGGGAGCATAAAGAGACGATAGTACAGTCAATAAGGGATGCAGTGGAAGAGTACAACTCCATATATGTTTTCTCCTTTGAAAACATGAGGAACCTCAAATTCAAACAGTTCAGAGAGCAGCTCAAATCCACAAGCAGATTTTTTCTTGGGTCAAATAAAGTCATGCAGGTTGCTTTAGGTCGCTCTGATTCtgatgaaataag...
690 bp · LXL04_016881|LXL04_016881|OH1004|CDS
ATGCCGAAATCCAAGAGAGACAGAGCAGTAACGTTGTCAAAGACAAAGAAGAAAGGAAGGGAGCATAAAGAGACGATAGTACAGTCAATAAGGGATGCAGTGGAAGAGTACAACTCCATATATGTTTTCTCCTTTGAAAACATGAGGAACCTCAAATTCAAACAGTTCAGAGAGCAGCTCAAATCCACAAGCAGATTTTTTCTTGGGTCAAATAAAGTCATGCAGGTTGCTTTAGGTCGCTCTGATTCTGATGAAATAAG...
Protein
Download Protein FASTA229 aa · LXL04_016881|LXL04_016881|OH1004|PROTEIN
MPKSKRDRAVTLSKTKKKGREHKETIVQSIRDAVEEYNSIYVFSFENMRNLKFKQFREQLKSTSRFFLGSNKVMQVALGRSDSDEIRTGLHKVSKLLRGDCGLCLTNMPIEEAQRIFNEYEDHDFARTGSIATETVELKEGPLDQFTHEMEPFLRKQGMPVRLSKGVVELVGDFIVCEEGKPISPESSRILRLMGIKMASFKLNLICRWSPENYEVYQEGLQGSDIESS
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_016881 |
|---|---|
| TK1151 ID | TkA04G456080 |
| OH-1004 ID | LXL04_016881 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 92.600 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_016881 |
|---|---|
| Location | Chr03:136052846-136054565 (-) |
| Description | Similar to MRTO4: mRNA turnover protein 4 homolog |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000027 ribosomal large subunit assembly Biological Process GO:0000956 nuclear-transcribed mRNA catabolic process Biological Process GO:0006364 rRNA processing Biological Process GO:0042273 ribosomal large subunit biogenesis Biological Process GO:0180023 cytosolic large ribosomal subunit assembly Biological Process GO:1902626 assembly of large subunit precursor of preribosome Biological Process GO:0005634 nucleus Cellular Component GO:0005730 nucleolus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0030684 preribosome Cellular Component GO:0030687 preribosome, large subunit precursor Cellular Component GO:0003723 RNA binding Molecular Function |
| KEGG gene cross-reference | bta:509932 ddi:DDB_G0276411 hsa:51154 mmu:69902 spo:2539913 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00466.26Ribosomal_L1019-120 aaPF17777.7RL10P_insert126-196 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_016881 | PF00466.26 | Ribosomal_L10 | 19 | 120 | 1.9e-21 | 76.7 |
| LXL04_016881 | PF17777.7 | RL10P_insert | 126 | 196 | 4.3e-22 | 78.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.