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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_016862
Reference: OH-1004 Chr: Chr03 Coordinates: 135812871-135820523 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3843 bp · LXL04_016862|LXL04_016862|OH1004|cDNA

ATGGCGGCCTCTTCATCTTCATCGATTGAACAGAAGAGCTTCAGATATGATGTATTTTTGCGTTTTAGAGGAATGAAGCCAGGTTCATTCAAAAAAATCATTGAGAAGATTTCACTAGAGCTATACAACATCAATTTTAGCTTTGATGAAAAGTTAGTTGGCATCGAGACCCGAGTAAATGATATTGTTTCATCTTTACGAATTAGTATAGATGATGTTCGCATGATCGGGATCAAAGGGATGAGAGGCGCTGGGAAGAC...

CDS

Download CDS FASTA

3843 bp · LXL04_016862|LXL04_016862|OH1004|CDS

ATGGCGGCCTCTTCATCTTCATCGATTGAACAGAAGAGCTTCAGATATGATGTATTTTTGCGTTTTAGAGGAATGAAGCCAGGTTCATTCAAAAAAATCATTGAGAAGATTTCACTAGAGCTATACAACATCAATTTTAGCTTTGATGAAAAGTTAGTTGGCATCGAGACCCGAGTAAATGATATTGTTTCATCTTTACGAATTAGTATAGATGATGTTCGCATGATCGGGATCAAAGGGATGAGAGGCGCTGGGAAGAC...

Protein

Download Protein FASTA

1280 aa · LXL04_016862|LXL04_016862|OH1004|PROTEIN

MAASSSSSIEQKSFRYDVFLRFRGMKPGSFKKIIEKISLELYNINFSFDEKLVGIETRVNDIVSSLRISIDDVRMIGIKGMRGAGKTTLARAVFDKISIQFEDKSFVDNVREVTSTLSSGLKSLQKQIISDMLHEDVRVSSAGDVQNILKQRMCGIKVLIVLDDVNDIELLEGLVGQRGWFKLGSRVIITTRDEQVLLAHRVTLIRDANLLSNEEAICLFNKYAFGREGPVDQGYEKLSKKVVLYASGLPLTIKVLGSLL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_016862
TK1151 IDTkA02G096320
OH-1004 IDLXL04_016862
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)68.000
Protein coverage (%)TK1151 69.613 / OH-1004 19.531
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_016862
LocationChr03:135812871-135820523 (-)
DescriptionSimilar to RUN1: Disease resistance protein RUN1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g44510 TIR-NB-LRR receptor-like protein that contributes to disease resistance induced by the Pseudomonas syringae type III effector AvrB.
Arabidopsis TAO1 is a TIR-NB-LRR protein that contributes to disease resistance induced by the Pseudomonas syringae effector AvrB.2008 · DOI: 10.1073/pnas.0802157105

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_016862 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0007165 signal transduction Biological Process
GO:0019677 NAD+ catabolic process Biological Process
GO:0043068 positive regulation of programmed cell death Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0003953 NAD+ nucleosidase activity Molecular Function
GO:0043531 ADP binding Molecular Function
GO:0050135 NADP+ nucleosidase activity Molecular Function
GO:0061809 NAD+ nucleosidase activity, cyclic ADP-ribose generating Molecular Function
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.492
Rank 1 · LXL04_016862 · OH-1004
Nucleus0.236
Rank 2 · LXL04_016862 · OH-1004
Cell membrane0.169
Rank 3 · LXL04_016862 · OH-1004
Endoplasmic reticulum0.099
Rank 4 · LXL04_016862 · OH-1004
Lysosome / Vacuole0.078
Rank 5 · LXL04_016862 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00931.29NB-ARC56-227 aa
PF23282.2WHD_ROQ1297-365 aa
PF23598.2LRR_14417-495 aa
PF13855.13LRR_8440-496 aa
PF23598.2LRR_14481-544 aa
PF23598.2LRR_14529-611 aa
PF23598.2LRR_14576-661 aa
PF23598.2LRR_14665-755 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_016862PF00931.29NB-ARC562274.1e-2176.0
LXL04_016862PF23282.2WHD_ROQ12973651.9e-32112.0
LXL04_016862PF23598.2LRR_144174951.7e-72244.8
LXL04_016862PF13855.13LRR_84404961.5e-36124.6
LXL04_016862PF23598.2LRR_144815441.7e-72244.8
LXL04_016862PF23598.2LRR_145296111.7e-72244.8
LXL04_016862PF23598.2LRR_145766611.7e-72244.8
LXL04_016862PF23598.2LRR_146657551.7e-72244.8
LXL04_016862PF23282.2WHD_ROQ19139801.9e-32112.0
LXL04_016862PF13855.13LRR_8103010901.5e-36124.6
LXL04_016862PF23598.2LRR_14103111311.7e-72244.8
LXL04_016862PF13855.13LRR_8105511131.5e-36124.6
LXL04_016862PF25013.1LRR_Zer-1107411372.1e-1557.8
LXL04_016862PF23598.2LRR_14109711571.7e-72244.8
LXL04_016862PF23598.2LRR_14114312031.7e-72244.8
LXL04_016862PF13855.13LRR_8114912071.5e-36124.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FI14Arabidopsis thalianaDisease resistance protein TAO130.810%Swiss-Protmoderate database homology

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