Gene Card
Gene overview
cDNA / CDS / Protein Sequences
4989 bp · LXL04_016561|LXL04_016561|OH1004|cDNA
ATGGCGAATTCAAAAAAAGGGACCGACTTATTAGAATTGCTTGTACGACTGAAATACCTGACGGCTCGTGGGAATCGAATCAGAAGGTTTGCAGGTATACAGGGACTGTTATATATAGTGACGGTTGTTGTCATGCGATTATCTCCGAATACTACTCCGTCTAAGAACGAGAAAGTGATTAGGGCTAAAAGGAAACACAAGAAGCTTGATGCGATATGTGAAAAGGAGTATACTGAGAACCGTGATAAGATAGAATATCC...
4989 bp · LXL04_016561|LXL04_016561|OH1004|CDS
ATGGCGAATTCAAAAAAAGGGACCGACTTATTAGAATTGCTTGTACGACTGAAATACCTGACGGCTCGTGGGAATCGAATCAGAAGGTTTGCAGGTATACAGGGACTGTTATATATAGTGACGGTTGTTGTCATGCGATTATCTCCGAATACTACTCCGTCTAAGAACGAGAAAGTGATTAGGGCTAAAAGGAAACACAAGAAGCTTGATGCGATATGTGAAAAGGAGTATACTGAGAACCGTGATAAGATAGAATATCC...
Protein
Download Protein FASTA1662 aa · LXL04_016561|LXL04_016561|OH1004|PROTEIN
MANSKKGTDLLELLVRLKYLTARGNRIRRFAGIQGLLYIVTVVVMRLSPNTTPSKNEKVIRAKRKHKKLDAICEKEYTENRDKIEYPKTNEANVDASEVRRSSRVSRPPLILDASPSPAKKRKRSERNGEGSSRRGGNRDRVSLKTDLPSSTTLGLDEDDSGEWKSRLRARRRKVTFMNGDSSPRSKKKLFNQSDGVNEHSDLLNPQLDDNKGGLVGETLMVVQPKRPGRVKASNVVTNGREEEDTTVFDVVKDNNNVCC...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_016561 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_016561 |
|---|---|
| Location | Chr03:126942285-126948809 (+) |
| Description | Similar to Atad2: ATPase family AAA domain-containing protein 2 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process GO:0006261 DNA-templated DNA replication Biological Process GO:0006325 chromatin organization Biological Process GO:0006334 nucleosome assembly Biological Process GO:0006337 nucleosome disassembly Biological Process GO:0006338 chromatin remodeling Biological Process GO:0034080 CENP-A containing chromatin assembly Biological Process GO:0045815 transcription initiation-coupled chromatin remodeling Biological Process GO:0045893 positive regulation of DNA-templated transcription Biological Process GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process GO:0000775 chromosome, centromeric region Cellular Component GO:0000785 chromatin Cellular Component |
| KEGG gene cross-reference | hsa:29028 mmu:70472 pon:100174282 sce:YGR270W These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF13832.13zf-HC5HC2H_2433-506 aaPF13771.13zf-HC5HC2H436-515 aaPF13191.13AAA_16641-752 aaPF00004.36AAA644-779 aaPF17862.8AAA_lid_3807-835 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_016561 | PF13832.13 | zf-HC5HC2H_2 | 433 | 506 | 3.5e-07 | 31.1 |
| LXL04_016561 | PF13771.13 | zf-HC5HC2H | 436 | 515 | 3.9e-10 | 40.5 |
| LXL04_016561 | PF13191.13 | AAA_16 | 641 | 752 | 3.2e-07 | 31.7 |
| LXL04_016561 | PF00004.36 | AAA | 644 | 779 | 2e-41 | 142.2 |
| LXL04_016561 | PF17862.8 | AAA_lid_3 | 807 | 835 | 2e-06 | 28.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.