LXL04_016557 | RubberDandelionOmics

Gene overview

LXL04_016557

Reference: OH-1004 Chr: Chr03 Coordinates: 126904628-126906121 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1008 bp · LXL04_016557|LXL04_016557|OH1004|cDNA

ATGGAGGTTTTGAAAATGGCGAATTCTAGGGTTTCTCTGCTCCGACATAGTTTGAACTCCTTTTTGCCGCCTTCTGCTACCTCGACGTTTACTCTTTCAATCTTACCTACCCGTAGATTCATCGTCTCGGCTTCCATTTCTTCAAGAGAAACATTTGTTGATTCACTGTCATCGCAAGAAGCTGCAGTTTCATCCGCCGGCTCTGAAACCCCTAAAATGAGCAATCGTTGGAAGCCAACGTGTTTGTACTTCACCCAAGA...

CDS

Download CDS FASTA

1008 bp · LXL04_016557|LXL04_016557|OH1004|CDS

ATGGAGGTTTTGAAAATGGCGAATTCTAGGGTTTCTCTGCTCCGACATAGTTTGAACTCCTTTTTGCCGCCTTCTGCTACCTCGACGTTTACTCTTTCAATCTTACCTACCCGTAGATTCATCGTCTCGGCTTCCATTTCTTCAAGAGAAACATTTGTTGATTCACTGTCATCGCAAGAAGCTGCAGTTTCATCCGCCGGCTCTGAAACCCCTAAAATGAGCAATCGTTGGAAGCCAACGTGTTTGTACTTCACCCAAGA...

Protein

Download Protein FASTA

335 aa · LXL04_016557|LXL04_016557|OH1004|PROTEIN

MEVLKMANSRVSLLRHSLNSFLPPSATSTFTLSILPTRRFIVSASISSRETFVDSLSSQEAAVSSAGSETPKMSNRWKPTCLYFTQEKCTMMQDLTHLQKFNHSFSMENALTPGEYKNKHSEHLDFFLVLDLEGKVEILEFPVLMIDANTMDVVAFFHRFVRPSEMSEERINQYIEGKYGKLGVDRVWHDTAIPFKDVIEQFEEWMTKHNLCSKEHGGPLHRAAFVTCGNWDIKTKIPQQCKVAKMKLPSYFMEWINLKD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_016557`
TK1151 ID	TkA02G123920
OH-1004 ID	LXL04_016557
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	96.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_016557

Location Chr03:126904628-126906121 (+)

Description Similar to At3g15140: Uncharacterized exonuclease domain-containing protein At3g15140

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g15140`	Uncharacterized exonuclease domain-containing protein At3g15140.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016557 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000460 maturation of 5.8S rRNA Biological Process

GO:0000467 exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process

GO:0031047 regulatory ncRNA-mediated gene silencing Biological Process

GO:0031125 rRNA 3'-end processing Biological Process

GO:0035194 regulatory ncRNA-mediated post-transcriptional gene silencing Biological Process

GO:0060906 negative regulation of regulatory ncRNA-mediated heterochromatin formation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT3G15140

bta:540516

hsa:79033

mmu:67276

rno:361159

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.407

Rank 1 · LXL04_016557 · OH-1004

Mitochondrion0.337

Rank 2 · LXL04_016557 · OH-1004

Nucleus0.183

Rank 3 · LXL04_016557 · OH-1004

Cytoplasm0.106

Rank 4 · LXL04_016557 · OH-1004

Cell membrane0.023

Rank 5 · LXL04_016557 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00929.32RNase_T130-302 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_016557	`PF00929.32`	RNase_T	130	302	3.2e-10	41.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8W566`	Arabidopsis thaliana	Uncharacterized exonuclease domain-containing protein At3g15140	64.615%	Swiss-Prot	strong database homology

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