Gene Card
Gene overview
cDNA / CDS / Protein Sequences
957 bp · LXL04_016525|LXL04_016525|OH1004|cDNA
ATGATATCAATGAGCTTCGCCGCCGCGGCACAGCCGTTTCTAAAAAGAGCAGTTCAAGCAATACCCAACCCTAATTTCACCCTCCTCAACCATAAGTTTCCTCCCTCTTCATTCCTTGCCCCTTTGACTTCTACAGGGACTGTTGGTATATGTCATATGGCACAAGCTATAAAGGGCGACTCAGAGGTTCTACCAAAAGGAACTGGTGAAAGGGGCTCCATTGAAGAAGTGAAGCATATTCTTGAAATGGCAAAAAGGGC...
957 bp · LXL04_016525|LXL04_016525|OH1004|CDS
ATGATATCAATGAGCTTCGCCGCCGCGGCACAGCCGTTTCTAAAAAGAGCAGTTCAAGCAATACCCAACCCTAATTTCACCCTCCTCAACCATAAGTTTCCTCCCTCTTCATTCCTTGCCCCTTTGACTTCTACAGGGACTGTTGGTATATGTCATATGGCACAAGCTATAAAGGGCGACTCAGAGGTTCTACCAAAAGGAACTGGTGAAAGGGGCTCCATTGAAGAAGTGAAGCATATTCTTGAAATGGCAAAAAGGGC...
Protein
Download Protein FASTA318 aa · LXL04_016525|LXL04_016525|OH1004|PROTEIN
MISMSFAAAAQPFLKRAVQAIPNPNFTLLNHKFPPSSFLAPLTSTGTVGICHMAQAIKGDSEVLPKGTGERGSIEEVKHILEMAKRASLRREVLHTDFLTPPVLKDAMVIIEKLADVKVVAQGGYPEAERCRLSVGHPEALTTDPDIVAALSISGNFGFQPCSHGDFLGSILGTGIVRDKLGDILLQGEKGAHVLVVPELVDFLTMSLEKVGNVPVTCKRMPLIALEYEPPKTKTFKTVEASMRIDSIASAGFKISRSKL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_016525 |
|---|---|
| TK1151 ID | TkA02G128780 |
| OH-1004 ID | LXL04_016525 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 97.510 / OH-1004 73.899Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_016525 |
|---|---|
| Location | Chr03:125732236-125734221 (+) |
| Description | Similar to ylmH: Putative RNA-binding protein YlmH (Bacillus subtilis (strain 168) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0042274 ribosomal small subunit biogenesis Biological Process GO:0072344 rescue of stalled cytosolic ribosome Biological Process GO:0005737 cytoplasm Cellular Component GO:0015935 small ribosomal subunit Cellular Component GO:1990112 RQC complex Cellular Component GO:0000049 tRNA binding Molecular Function GO:0003735 structural constituent of ribosome Molecular Function GO:0019843 rRNA binding Molecular Function GO:0043023 ribosomal large subunit binding Molecular Function |
| KEGG gene cross-reference | bsu:BSU15410 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF21278.4YlmH_1st74-139 aaPF17774.8YlmH_RBD151-223 aaPF01479.31S4243-289 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_016525 | PF21278.4 | YlmH_1st | 74 | 139 | 5.4e-34 | 116.4 |
| LXL04_016525 | PF17774.8 | YlmH_RBD | 151 | 223 | 2e-12 | 48.0 |
| LXL04_016525 | PF01479.31 | S4 | 243 | 289 | 2.7e-08 | 34.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.