LXL04_016216 | RubberDandelionOmics

Gene overview

LXL04_016216

Reference: OH-1004 Chr: Chr03 Coordinates: 115496936-115501149 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3318 bp · LXL04_016216|LXL04_016216|OH1004|cDNA

ATGGCGTCTTCTTCAACTTCATCTGTTCCTAAGATCTTTAAATATGATGTATTTCTGAGTTTTAGAGGTGAAGACACTCGTACAAACTTCACTGATCATCTTTATGATGCTCTTAAGCGAAAAGGCATTTTTACATACAAGGATGATGAGGCAATCAGAAAGGGAAACTTGATCAGCGATGAGCTGATCCAATCTATTGAAGACTCAAGATTCTATATCATAGTTTTCTCAAAGAACTATGCATCTTCCCGTTGGTGTTT...

CDS

Download CDS FASTA

3318 bp · LXL04_016216|LXL04_016216|OH1004|CDS

ATGGCGTCTTCTTCAACTTCATCTGTTCCTAAGATCTTTAAATATGATGTATTTCTGAGTTTTAGAGGTGAAGACACTCGTACAAACTTCACTGATCATCTTTATGATGCTCTTAAGCGAAAAGGCATTTTTACATACAAGGATGATGAGGCAATCAGAAAGGGAAACTTGATCAGCGATGAGCTGATCCAATCTATTGAAGACTCAAGATTCTATATCATAGTTTTCTCAAAGAACTATGCATCTTCCCGTTGGTGTTT...

Protein

Download Protein FASTA

1105 aa · LXL04_016216|LXL04_016216|OH1004|PROTEIN

MASSSTSSVPKIFKYDVFLSFRGEDTRTNFTDHLYDALKRKGIFTYKDDEAIRKGNLISDELIQSIEDSRFYIIVFSKNYASSRWCLDELVKIMEYQKTIEHTAYPVFYDVEPTEVRKQIGAVGKAFAKHKRDKAARRWKEALKEAADLAGWELKKTANGHEAEFIQIIVEDISKCLPSNNYCFDEKLVGMETRVKNVISYLEMDIDDVTMVGIKGIGGGGKTTLARVVYDQISFQFEGICFVDNVRENSKASVYGLASL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_016216`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_016216

Location Chr03:115496936-115501149 (+)

Description Similar to RPV1: Disease resistance protein RPV1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g16950`	TIR-NB-LRR receptor-like protein that confers resistance to the pathogen Hyaloperonospora arabidopsis isolate Noco2 (downy mildew disease).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_016216 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0007165 signal transduction Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0019677 NAD+ catabolic process Biological Process

GO:0043068 positive regulation of programmed cell death Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0003953 NAD+ nucleosidase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0042803 protein homodimerization activity Molecular Function

GO:0043531 ADP binding Molecular Function

KEGG gene cross-reference No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.444

Rank 1 · LXL04_016216 · OH-1004

Nucleus0.275

Rank 2 · LXL04_016216 · OH-1004

Cell membrane0.266

Rank 3 · LXL04_016216 · OH-1004

Endoplasmic reticulum0.101

Rank 4 · LXL04_016216 · OH-1004

Extracellular0.055

Rank 5 · LXL04_016216 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01582.26TIR14-177 aa

PF13676.12TIR_217-113 aa

PF00931.29NB-ARC192-365 aa

PF23282.2WHD_ROQ1433-503 aa

PF23598.2LRR_14830-907 aa

PF23598.2LRR_14905-1040 aa

PF13855.13LRR_8938-994 aa

PF23952.2LRR_EndoS965-1041 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_016216	`PF01582.26`	TIR	14	177	3.3e-49	167.8
LXL04_016216	`PF13676.12`	TIR_2	17	113	1.6e-14	55.1
LXL04_016216	`PF00931.29`	NB-ARC	192	365	1.9e-21	77.1
LXL04_016216	`PF23282.2`	WHD_ROQ1	433	503	2e-15	57.4
LXL04_016216	`PF23598.2`	LRR_14	830	907	2.1e-17	63.6
LXL04_016216	`PF23598.2`	LRR_14	905	1040	2.1e-17	63.6
LXL04_016216	`PF13855.13`	LRR_8	938	994	3.1e-16	59.6
LXL04_016216	`PF23952.2`	LRR_EndoS	965	1041	1.7e-08	35.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4JNB7`	Arabidopsis thaliana	Disease resistance protein RPP5	31.923%	Swiss-Prot	moderate database homology

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