LXL04_016176 | RubberDandelionOmics

Gene overview

LXL04_016176

Reference: OH-1004 Chr: Chr03 Coordinates: 113352689-113356218 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3111 bp · LXL04_016176|LXL04_016176|OH1004|cDNA

ATGGCATCTTCCTCAACTTCATCCATCGACAAAAGCTTTAAATATGATGTGTTTTTAAGTTTTAGAGGCGAAGACACTCGTACAAACTTCGTCGATCATCTTTATTCTGCTCTTGAGCATAAAAACATTTACACTTACAAGGATGACCAAAGAATCAAGAAAGGGAAAAGAATCAGTGATGAGCTCATCAGATCCATTCAAGACTCAAAGTTTTACATCATTGTTTTCTCCAAGAACTATGCATCTTCATCTTGGTGCTT...

CDS

Download CDS FASTA

3111 bp · LXL04_016176|LXL04_016176|OH1004|CDS

ATGGCATCTTCCTCAACTTCATCCATCGACAAAAGCTTTAAATATGATGTGTTTTTAAGTTTTAGAGGCGAAGACACTCGTACAAACTTCGTCGATCATCTTTATTCTGCTCTTGAGCATAAAAACATTTACACTTACAAGGATGACCAAAGAATCAAGAAAGGGAAAAGAATCAGTGATGAGCTCATCAGATCCATTCAAGACTCAAAGTTTTACATCATTGTTTTCTCCAAGAACTATGCATCTTCATCTTGGTGCTT...

Protein

Download Protein FASTA

1036 aa · LXL04_016176|LXL04_016176|OH1004|PROTEIN

MASSSTSSIDKSFKYDVFLSFRGEDTRTNFVDHLYSALEHKNIYTYKDDQRIKKGKRISDELIRSIQDSKFYIIVFSKNYASSSWCLDELVNIMECHKTIEHTAYPIFYDVEPSEVRKQSGTIGEAFAQHEKAPAAGKWREALKEAADLSGWELKKTADGHEAKLIEIIVEHLALELCSIDFSVDEKLVGMETRVKGLISSLEIGINDVRMIGIKGMGGGGKTTLARVVFDQMSFLFESKSFVENVREVSSSSLSGLMSL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_016176`
TK1151 ID	TkA02G180130
OH-1004 ID	LXL04_016176
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	92.200
Protein coverage (%)	TK1151 89.305 / OH-1004 16.120 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_016176

Location Chr03:113352689-113356218 (-)

Description Similar to RPV1: Disease resistance protein RPV1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g12010`	TIR-NB-LRR receptor-like protein involved in plant defense.	Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles.2017 · DOI: 10.1016/j.chom.2017.03.005

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016176 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007165 signal transduction Biological Process

GO:0019677 NAD+ catabolic process Biological Process

GO:0043068 positive regulation of programmed cell death Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0003953 NAD+ nucleosidase activity Molecular Function

GO:0042803 protein homodimerization activity Molecular Function

GO:0043531 ADP binding Molecular Function

GO:0050135 NADP+ nucleosidase activity Molecular Function

GO:0061809 NAD+ nucleosidase activity, cyclic ADP-ribose generating Molecular Function

KEGG gene cross-reference No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.400

Rank 1 · LXL04_016176 · OH-1004

Cell membrane0.310

Rank 2 · LXL04_016176 · OH-1004

Nucleus0.218

Rank 3 · LXL04_016176 · OH-1004

Endoplasmic reticulum0.104

Rank 4 · LXL04_016176 · OH-1004

Lysosome / Vacuole0.057

Rank 5 · LXL04_016176 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01582.26TIR14-177 aa

PF13676.12TIR_217-112 aa

PF00931.29NB-ARC198-364 aa

PF23282.2WHD_ROQ1433-504 aa

PF23598.2LRR_14657-737 aa

PF25019.1LRR_R13L1-DRL21696-758 aa

PF23598.2LRR_14724-775 aa

PF13855.13LRR_8750-807 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_016176	`PF01582.26`	TIR	14	177	4.2e-49	167.5
LXL04_016176	`PF13676.12`	TIR_2	17	112	6.3e-15	56.5
LXL04_016176	`PF00931.29`	NB-ARC	198	364	2.1e-19	70.5
LXL04_016176	`PF23282.2`	WHD_ROQ1	433	504	8.9e-16	58.5
LXL04_016176	`PF23598.2`	LRR_14	657	737	5.6e-44	151.0
LXL04_016176	`PF25019.1`	LRR_R13L1-DRL21	696	758	7.8e-16	58.9
LXL04_016176	`PF23598.2`	LRR_14	724	775	5.6e-44	151.0
LXL04_016176	`PF13855.13`	LRR_8	750	807	2.6e-19	69.4
LXL04_016176	`PF23598.2`	LRR_14	772	827	5.6e-44	151.0
LXL04_016176	`PF23598.2`	LRR_14	815	894	5.6e-44	151.0
LXL04_016176	`PF13855.13`	LRR_8	892	947	2.6e-19	69.4
LXL04_016176	`PF23598.2`	LRR_14	894	971	5.6e-44	151.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SZ66`	Arabidopsis thaliana	Disease resistance-like protein DSC1	34.706%	Swiss-Prot	moderate database homology

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