LXL04_016110 | RubberDandelionOmics

Gene overview

LXL04_016110

Reference: OH-1004 Chr: Chr03 Coordinates: 110774935-110778214 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1446 bp · LXL04_016110|LXL04_016110|OH1004|cDNA

ATGGCACAGCTGTTGAAGAAAGTTTGGGAGTCGATTTCCAATGGTTGGACTTCGAGTGATTCTAGTTCAGACTCGCTATATAATTTTGACTACAGAGGTCCAGTTCATGGATCCCTATCGGATCAGATTATCATCTGTTCATCATCCACTGGGGCATTTGATCGATTTCCTCTAGATATATTTATGCAAATACTCAAGCTTCTTGGACCAAAAGAGGCGGCTAGGCTAACCTGCGTTTGCAAATCGTGGCAATTCATTAT...

CDS

Download CDS FASTA

1446 bp · LXL04_016110|LXL04_016110|OH1004|CDS

ATGGCACAGCTGTTGAAGAAAGTTTGGGAGTCGATTTCCAATGGTTGGACTTCGAGTGATTCTAGTTCAGACTCGCTATATAATTTTGACTACAGAGGTCCAGTTCATGGATCCCTATCGGATCAGATTATCATCTGTTCATCATCCACTGGGGCATTTGATCGATTTCCTCTAGATATATTTATGCAAATACTCAAGCTTCTTGGACCAAAAGAGGCGGCTAGGCTAACCTGCGTTTGCAAATCGTGGCAATTCATTAT...

Protein

Download Protein FASTA

481 aa · LXL04_016110|LXL04_016110|OH1004|PROTEIN

MAQLLKKVWESISNGWTSSDSSSDSLYNFDYRGPVHGSLSDQIIICSSSTGAFDRFPLDIFMQILKLLGPKEAARLTCVCKSWQFIISDNMLWIYFLQNQQEPWDSVFFGETNLRSGFPLRTYPRQMQSFMHIYGERAQVPGSIIIDGGAGYCKFGWSKYDSPSGRSATFVEFGNIESPLYARLRHFFATVYSRMRVRSSTQPVIISIPISHYDDTDADKAFRRRLKEAIHSALFGMNAPAVCAVSQATLALFSARRTSG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_016110`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_016110

Location Chr03:110774935-110778214 (+)

Description Similar to ARP8: Actin-related protein 8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g56180`	Actin-related protein 8.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0667700`	Actin-related protein 8.	No verified direct reference in this release
`UniProt: A8WAT2`	Actin-related protein 8.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_016110 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0030029 actin filament-based process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005856 cytoskeleton Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0015629 actin cytoskeleton Cellular Component

GO:0005200 structural constituent of cytoskeleton Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0016787 hydrolase activity Molecular Function

KEGG gene cross-reference

ath:AT5G56180

dosa:Os04g0667700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.437

Rank 1 · LXL04_016110 · OH-1004

Nucleus0.433

Rank 2 · LXL04_016110 · OH-1004

Cell membrane0.103

Rank 3 · LXL04_016110 · OH-1004

Mitochondrion0.096

Rank 4 · LXL04_016110 · OH-1004

Endoplasmic reticulum0.052

Rank 5 · LXL04_016110 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646.39F-box54-94 aa

PF12937.13F-box-like55-94 aa

PF00022.27Actin233-470 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_016110	`PF00646.39`	F-box	54	94	7.4e-09	35.9
LXL04_016110	`PF12937.13`	F-box-like	55	94	5.2e-09	36.4
LXL04_016110	`PF00022.27`	Actin	233	470	3.2e-40	138.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FKT0`	Arabidopsis thaliana	Actin-related protein 8	58.333%	Swiss-Prot	strong database homology
`Q7XR80`	Oryza sativa subsp. japonica	Actin-related protein 8	56.322%	Swiss-Prot	strong database homology
`A8WAT2`	Oryza sativa subsp. indica	Actin-related protein 8	56.322%	Swiss-Prot	strong database homology

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