LXL04_016009 | RubberDandelionOmics

Gene overview

LXL04_016009

Reference: OH-1004 Chr: Chr03 Coordinates: 103493923-103500020 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3627 bp · LXL04_016009|LXL04_016009|OH1004|cDNA

TTTCACGTTACTAGTGATCTAACCTCTGTTCTTGTGAGCACTcagttcatcttcttcctaCTTAAAATTTTCTCATTTGAACTTTTAGGCACCGTCAAGATTACATCAATGGCGTCTTCTTCCACTTCATTCATTCAAAAGAGTTTTAAATATGATGTGTTTTTGAGTTTTAGAGGCGAAGACACTCGCACGAATTTCGTTGATCATCTTTATCATGCTTTACAGCAAAAAGGCATTCACACTTACAAAGACGACGAGAG...

CDS

Download CDS FASTA

3519 bp · LXL04_016009|LXL04_016009|OH1004|CDS

ATGGCGTCTTCTTCCACTTCATTCATTCAAAAGAGTTTTAAATATGATGTGTTTTTGAGTTTTAGAGGCGAAGACACTCGCACGAATTTCGTTGATCATCTTTATCATGCTTTACAGCAAAAAGGCATTCACACTTACAAAGACGACGAGAGAATCAAAAAGGGCAAAAAGATCTGTGATGAACTTATCCAATCCATCAAAGATTCAAAGCTCTATATCATAGTTTTCTCAAAAAACTATGCCTCATCGTCTTGGTGCTT...

Protein

Download Protein FASTA

1172 aa · LXL04_016009|LXL04_016009|OH1004|PROTEIN

MASSSTSFIQKSFKYDVFLSFRGEDTRTNFVDHLYHALQQKGIHTYKDDERIKKGKKICDELIQSIKDSKLYIIVFSKNYASSSWCLDELVKIMECQNVAEHTAYPVFYDVEPSEVRKQSGAVGKAFAKHENEEVADKWRVVLKEAADLAGWELKNTADRHESKFIQKLVEEVSLELRAINFKIDEKLIGMETRINDVLSSSRTGFDDVCMIGIKGIGGGGKTTLARAIFDQVSFQFEGISFVENVREVSKSSLTGLKSL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_016009`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_016009

Location Chr03:103493923-103500020 (-)

Description Similar to RPV1: Disease resistance protein RPV1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g44480`	TIR-NB-LRR receptor-like protein that confers resistance to the pathogen Hyaloperonospora arabidopsis (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_016009 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007165 signal transduction Biological Process

GO:0019677 NAD+ catabolic process Biological Process

GO:0043068 positive regulation of programmed cell death Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0003953 NAD+ nucleosidase activity Molecular Function

GO:0042803 protein homodimerization activity Molecular Function

GO:0043531 ADP binding Molecular Function

GO:0050135 NADP+ nucleosidase activity Molecular Function

GO:0061809 NAD+ nucleosidase activity, cyclic ADP-ribose generating Molecular Function

KEGG gene cross-reference No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.468

Rank 1 · LXL04_016009 · OH-1004

Nucleus0.305

Rank 2 · LXL04_016009 · OH-1004

Cell membrane0.224

Rank 3 · LXL04_016009 · OH-1004

Endoplasmic reticulum0.098

Rank 4 · LXL04_016009 · OH-1004

Plastid0.044

Rank 5 · LXL04_016009 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01582.26TIR14-177 aa

PF13676.12TIR_217-113 aa

PF00931.29NB-ARC207-362 aa

PF23282.2WHD_ROQ1432-501 aa

PF23598.2LRR_14935-1039 aa

PF13855.13LRR_81012-1067 aa

PF23598.2LRR_141029-1149 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_016009	`PF01582.26`	TIR	14	177	1.5e-49	168.9
LXL04_016009	`PF13676.12`	TIR_2	17	113	1.2e-15	58.8
LXL04_016009	`PF00931.29`	NB-ARC	207	362	2e-19	70.5
LXL04_016009	`PF23282.2`	WHD_ROQ1	432	501	6.4e-17	62.2
LXL04_016009	`PF23598.2`	LRR_14	935	1039	7.2e-24	84.9
LXL04_016009	`PF13855.13`	LRR_8	1012	1067	2.1e-14	53.7
LXL04_016009	`PF23598.2`	LRR_14	1029	1149	7.2e-24	84.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4J339`	Arabidopsis thaliana	Probable disease resistance protein RPP1	34.915%	Swiss-Prot	moderate database homology

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