Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2073 bp · LXL04_015933|LXL04_015933|OH1004|cDNA
ATGAAGTCACTAATAGAACAATTGAATGTTCTTGAGACGCCTGggcaatcttcaagtgatcTTCAAGTCAATCTTCAAGTAGCTTTGAAGATGCTCACAAGCACTGATGAGGGAAAGGGAAAAGGGAGAGTTTGCACAAAGGGAGTATTTGCACAAACTGATATGATAGTAAGTGAATTGGCAAGGAAAGAAGACGGGGCCGCCGGCACCCAGCACGTGATCATCACTCCGGCCACCATTCGAAATGCCCTACGCCTCCC...
2073 bp · LXL04_015933|LXL04_015933|OH1004|CDS
ATGAAGTCACTAATAGAACAATTGAATGTTCTTGAGACGCCTGGGCAATCTTCAAGTGATCTTCAAGTCAATCTTCAAGTAGCTTTGAAGATGCTCACAAGCACTGATGAGGGAAAGGGAAAAGGGAGAGTTTGCACAAAGGGAGTATTTGCACAAACTGATATGATAGTAAGTGAATTGGCAAGGAAAGAAGACGGGGCCGCCGGCACCCAGCACGTGATCATCACTCCGGCCACCATTCGAAATGCCCTACGCCTCCC...
Protein
Download Protein FASTA690 aa · LXL04_015933|LXL04_015933|OH1004|PROTEIN
MKSLIEQLNVLETPGQSSSDLQVNLQVALKMLTSTDEGKGKGRVCTKGVFAQTDMIVSELARKEDGAAGTQHVIITPATIRNALRLPIFHEYPPHPDEAEYRASLPLISYNLARQGTRNENFILRQCLPAGWKLVTGIIGKCLGHKTGSLDQLNLFELRILHALVANRMYDFAGLIFDHLVATISGKARPTYVTFPRFIGLFLQHIGDGYAGEPEDERPCSTMSPRLFSTAPQAGDPPPFPHMVDWSANPYSEDPRPVNF...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_015933 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_015933 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:99233060-99242666 (-) | ||||||||||||
| Description | Similar to RRP46: Exosome complex exonuclease RRP46 homolog | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
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| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0006364 rRNA processing Biological Process GO:0006396 RNA processing Biological Process GO:0006401 RNA catabolic process Biological Process GO:0006402 mRNA catabolic process Biological Process GO:0016075 rRNA catabolic process Biological Process GO:0034475 U4 snRNA 3'-end processing Biological Process GO:0045006 DNA deamination Biological Process GO:0051607 defense response to virus Biological Process GO:0071028 nuclear mRNA surveillance Biological Process GO:0071051 poly(A)-dependent snoRNA 3'-end processing Biological Process GO:0000176 nuclear exosome (RNase complex) Cellular Component GO:0000177 cytoplasmic exosome (RNase complex) Cellular Component | ||||||||||||
| KEGG gene cross-reference | ath:AT3G46210 dosa:Os03g0854200 hsa:56915 mmu:27998 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.