LXL04_015811 | RubberDandelionOmics

Gene overview

LXL04_015811

Reference: OH-1004 Chr: Chr03 Coordinates: 86837453-86848117 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

4647 bp · LXL04_015811|LXL04_015811|OH1004|cDNA

ATGCAAGCCACCATTACTCGAATGACATTGAGTCAAGATGAACAAAAGAAAAGGATGGCCATATCCATGAAAGCAAAGTACGATAAATATTGGGACAATGTAGATAATATGAATTATCTATTATATGTTGCGGTTGTCTTGGATCCACGAAACAAACTTGCATATGTTAGTTATTGCATTGAATTGATATATGGTAAGGGCATGGAGAAAAGCAAAGAGATAGTGGGAAATGCGAGCAAAACACTTGATGAGTTGTTTAA...

CDS

Download CDS FASTA

4647 bp · LXL04_015811|LXL04_015811|OH1004|CDS

ATGCAAGCCACCATTACTCGAATGACATTGAGTCAAGATGAACAAAAGAAAAGGATGGCCATATCCATGAAAGCAAAGTACGATAAATATTGGGACAATGTAGATAATATGAATTATCTATTATATGTTGCGGTTGTCTTGGATCCACGAAACAAACTTGCATATGTTAGTTATTGCATTGAATTGATATATGGTAAGGGCATGGAGAAAAGCAAAGAGATAGTGGGAAATGCGAGCAAAACACTTGATGAGTTGTTTAA...

Protein

Download Protein FASTA

1548 aa · LXL04_015811|LXL04_015811|OH1004|PROTEIN

MQATITRMTLSQDEQKKRMAISMKAKYDKYWDNVDNMNYLLYVAVVLDPRNKLAYVSYCIELIYGKGMEKSKEIVGNASKTLDELFNHYKGKSEKRNVPNTHDNIFGENSSVIGEMDMDLELEFDKFDDGGQEFKSEVEIYLADVREKRDQKFDLLGWWKANSTKFPILSKLARHVLAMPISTVASESAHSSIDLELGCAMKNRDIDEFNDKMGSLNIDDTNMEWDKGWCELKGSWGELGVLFWIVLALIGYATKDYLNI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015811`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_015811

Location Chr03:86837453-86848117 (-)

Description Similar to Os05g0239150: Zinc finger BED domain-containing protein RICESLEEPER 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g42170`	Transposase-like protein that is essential for plant growth and development.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0239150`	Transposase-like protein that is essential for plant growth and development.	No verified direct reference in this release
`Os05g0583200`	Transposase-like protein that is essential for plant growth and development.	No verified direct reference in this release
`Os03g0733400`	Transposase-like protein that is essential for plant growth and development.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015811 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006310 DNA recombination Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0032196 transposition Biological Process

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:0046983 protein dimerization activity Molecular Function

KEGG gene cross-reference

ath:AT3G42170

dosa:Os03g0733400

dosa:Os05g0239150

dosa:Os05g0583200

osa:4339741

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.448

Rank 1 · LXL04_015811 · OH-1004

Nucleus0.380

Rank 2 · LXL04_015811 · OH-1004

Cell membrane0.104

Rank 3 · LXL04_015811 · OH-1004

Endoplasmic reticulum0.090

Rank 4 · LXL04_015811 · OH-1004

Mitochondrion0.086

Rank 5 · LXL04_015811 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14372.13hAT-like_RNase-H2-89 aa

PF05699.20Dimer_Tnp_hAT137-191 aa

PF03004.20Transposase_241395-1445 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015811	`PF14372.13`	hAT-like_RNase-H	2	89	1.8e-16	60.9
LXL04_015811	`PF05699.20`	Dimer_Tnp_hAT	137	191	7.6e-16	58.4
LXL04_015811	`PF03004.20`	Transposase_24	1395	1445	2.8e-06	28.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M2N5`	Arabidopsis thaliana	Zinc finger BED domain-containing protein DAYSLEEPER	30.189%	Swiss-Prot	weak database homology
`B9FJG3`	Oryza sativa subsp. japonica	Zinc finger BED domain-containing protein RICESLEEPER 1	31.980%	Swiss-Prot	weak database homology
`Q75HY5`	Oryza sativa subsp. japonica	Zinc finger BED domain-containing protein RICESLEEPER 3	32.812%	Swiss-Prot	weak database homology
`Q6AVI0`	Oryza sativa subsp. japonica	Zinc finger BED domain-containing protein RICESLEEPER 2	31.472%	Swiss-Prot	weak database homology

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