LXL04_015775 | RubberDandelionOmics

Gene overview

LXL04_015775

Reference: OH-1004 Chr: Chr03 Coordinates: 83924818-83926436 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

414 bp · LXL04_015775|LXL04_015775|OH1004|cDNA

ATGACCACTGAAACTGCCGTCGCTCCTGTCATCACAAGCCCCGATCAACATCCAAAGAAGAACCGCATTCAAGTCTCcaacaccaaaaaacctcttTTCTTCTATGTCAATCTTGCTAAGAGGTACATTCAACAACATGATGAAGTTGAGCTATCTGCTTTGGGCATGGCAATTACTACAGTTGTTACAGTAGCTGAAATACTCAAGAATAATGGACTTGCTGTCGAGAAAAAGGTCGTGACATCAACTATCGGCATGAA...

CDS

Download CDS FASTA

414 bp · LXL04_015775|LXL04_015775|OH1004|CDS

ATGACCACTGAAACTGCCGTCGCTCCTGTCATCACAAGCCCCGATCAACATCCAAAGAAGAACCGCATTCAAGTCTCCAACACCAAAAAACCTCTTTTCTTCTATGTCAATCTTGCTAAGAGGTACATTCAACAACATGATGAAGTTGAGCTATCTGCTTTGGGCATGGCAATTACTACAGTTGTTACAGTAGCTGAAATACTCAAGAATAATGGACTTGCTGTCGAGAAAAAGGTCGTGACATCAACTATCGGCATGAA...

Protein

Download Protein FASTA

137 aa · LXL04_015775|LXL04_015775|OH1004|PROTEIN

MTTETAVAPVITSPDQHPKKNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTVAEILKNNGLAVEKKVVTSTIGMKDETRGRLIQKARIEIVLGKTEKYASMASPTSATQAREKETIANNNEEKKQ

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015775`
TK1151 ID	TkA02G287230
OH-1004 ID	LXL04_015775
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_015775

Location Chr03:83924818-83926436 (+)

Description Similar to At2g34160: Uncharacterized protein At2g34160

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g34160`	Uncharacterized protein At2g34160.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_015775 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006364 rRNA processing Biological Process

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0003723 RNA binding Molecular Function

GO:0003729 mRNA binding Molecular Function

KEGG gene cross-reference

ath:AT2G34160

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.615

Rank 1 · LXL04_015775 · OH-1004

Nucleus0.473

Rank 2 · LXL04_015775 · OH-1004

Endoplasmic reticulum0.069

Rank 3 · LXL04_015775 · OH-1004

Mitochondrion0.059

Rank 4 · LXL04_015775 · OH-1004

Cell membrane0.046

Rank 5 · LXL04_015775 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01918.28Alba21-83 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015775	`PF01918.28`	Alba	21	83	1.2e-14	54.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O22969`	Arabidopsis thaliana	Uncharacterized protein At2g34160	71.000%	Swiss-Prot	strong database homology

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