LXL04_015735 | RubberDandelionOmics

Gene overview

LXL04_015735

Reference: OH-1004 Chr: Chr03 Coordinates: 82468989-82480940 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2582 bp · LXL04_015735|LXL04_015735|OH1004|cDNA

ATGAAGGCAGATGAAGGTTGTGGTACTAAACGGTGGGAAGTGGTGAAGGTCGTAGTGGTGGCCAACGACATTGGTGCGATGTTAAAGAAGGATTGCAATTTGAAAATATGTGCGATGCTGGTGaagatcttcatcttcatcgcACAAGTATGGGTTCTTGATAATCAACATGTCGTACATAAGGCAGGACATCGGTTTGCTCACCTATGTAGAATGGATGCCAGAAAGCTAATTCCTATCGTAGAAAGAACCTCTGACAT...

CDS

Download CDS FASTA

2307 bp · LXL04_015735|LXL04_015735|OH1004|CDS

ATGAAGGCAGATGAAGGTTGTGGTACTAAACGGTGGGAAGTGGTGAAGGTCGTAGTGGTGGCCAACGACATTGGTGCGATGTTAAAGAAGGATTGCAATTTGAAAATATGTGCGATGCTGGTGAAGATCTTCATCTTCATCGCACAAGTATGGGTTCTTGATAATCAACATGTCGTACATAAGGCAGGACATCGGTTTGCTCACCTATGTAGAATGGATGCCAGAAAGCTAATTCCTATCGTAGAAAGAACCTCTGACAT...

Protein

Download Protein FASTA

768 aa · LXL04_015735|LXL04_015735|OH1004|PROTEIN

MKADEGCGTKRWEVVKVVVVANDIGAMLKKDCNLKICAMLVKIFIFIAQVWVLDNQHVVHKAGHRFAHLCRMDARKLIPIVERTSDMKEEDASAQVMAELLASHILITNVVPVAVTDYKTGPMTEHYSRNAPMNNIAEMVLMVDIFTKLVLYQENIPEMVPKCGSNKDSLESCISVYNHAFTFPEQGHVLDLFASALDHVGIAELKVVIEKTGGLVVLAESFGHSVLNQILCEHPLSTSRALCDSLGHTADKEMKKSYLL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015735`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_015735

Location Chr03:82468989-82480940 (-)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g23660`	Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER).	No verified direct reference in this release
`At4g14160`	Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER).	No verified direct reference in this release
`At1g05520`	Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER) (By similarity).	No verified direct reference in this release
`At2g21630`	Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER) (By similarity).	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2YAA5`	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015735 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006886 intracellular protein transport Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0090110 COPII-coated vesicle cargo loading Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005829 cytosol Cellular Component

GO:0030127 COPII vesicle coat Cellular Component

GO:0070971 endoplasmic reticulum exit site Cellular Component

KEGG gene cross-reference

ath:AT1G05520

ath:AT2G21630

ath:AT3G23660

ath:AT4G14160

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.654

Rank 1 · LXL04_015735 · OH-1004

Cytoplasm0.311

Rank 2 · LXL04_015735 · OH-1004

Mitochondrion0.065

Rank 3 · LXL04_015735 · OH-1004

Endoplasmic reticulum0.046

Rank 4 · LXL04_015735 · OH-1004

Cell membrane0.045

Rank 5 · LXL04_015735 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04811.22Sec23_trunk180-228 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015735	`PF04811.22`	Sec23_trunk	180	228	2.2e-08	34.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LUG1`	Arabidopsis thaliana	Protein transport protein SEC23 E	80.952%	Swiss-Prot	weak database homology
`Q8VXX0`	Arabidopsis thaliana	Protein transport protein SEC23 F	80.952%	Swiss-Prot	weak database homology
`Q8H0S3`	Arabidopsis thaliana	Protein transport protein SEC23 B	78.571%	Swiss-Prot	weak database homology
`Q9SIJ7`	Arabidopsis thaliana	Protein transport protein SEC23 C	73.913%	Swiss-Prot	weak database homology
`A2YAA5`	Oryza sativa subsp. indica	Auxin response factor 16	37.234%	Swiss-Prot	weak database homology

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