LXL04_015734 | RubberDandelionOmics

Gene overview

LXL04_015734

Reference: OH-1004 Chr: Chr03 Coordinates: 82466980-82468334 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

744 bp · LXL04_015734|LXL04_015734|OH1004|cDNA

ATGGACGGCGGAGGTGCGTCGAGGGAGACCGGAATCATCAATCTAGCCGGCGTGAACTCATCTTCCGCAGTGGATCTAACCGATCAGATCCATCAGCTGCCTTGCTGCATCAAGTACGACGGACCATCCCCTGTTTCTCACTACTTCAAACCTAAACCCACCGGGATTGAGGTGGATGGTGTAAACGTGAAGGATGCTTATTTCAGAGGACGTAAATTGCAAGGCACAACCGTTGCTTTTCCTGATGGTTATTCCGGTAT...

CDS

Download CDS FASTA

744 bp · LXL04_015734|LXL04_015734|OH1004|CDS

ATGGACGGCGGAGGTGCGTCGAGGGAGACCGGAATCATCAATCTAGCCGGCGTGAACTCATCTTCCGCAGTGGATCTAACCGATCAGATCCATCAGCTGCCTTGCTGCATCAAGTACGACGGACCATCCCCTGTTTCTCACTACTTCAAACCTAAACCCACCGGGATTGAGGTGGATGGTGTAAACGTGAAGGATGCTTATTTCAGAGGACGTAAATTGCAAGGCACAACCGTTGCTTTTCCTGATGGTTATTCCGGTAT...

Protein

Download Protein FASTA

247 aa · LXL04_015734|LXL04_015734|OH1004|PROTEIN

MDGGGASRETGIINLAGVNSSSAVDLTDQIHQLPCCIKYDGPSPVSHYFKPKPTGIEVDGVNVKDAYFRGRKLQGTTVAFPDGYSGIDLNSHLFCFPDLGHSSASGDIEVGPWGGKGGYNPFSHRPEGRISEIRLRTGGCVDSIRITRTDASRTKHHSETYGGDGGSAHTITFADDEYLIGISGTVGTYVGITVITSLAFQTNKKTTEHYGTFQGTSFSLSISKGHIVGFTGNYGDFLDSFGLILHA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015734`
TK1151 ID	TkA02G290280
OH-1004 ID	LXL04_015734
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	70.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_015734

Location Chr03:82466980-82468334 (+)

Description Similar to JAL19: Jacalin-related lectin 19

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g73040`	Jacalin-related lectin 19.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015734 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007157 heterophilic cell-cell adhesion Biological Process

GO:0048046 apoplast Cellular Component

GO:0005536 D-glucose binding Molecular Function

GO:0005537 D-mannose binding Molecular Function

GO:0030246 carbohydrate binding Molecular Function

KEGG gene cross-reference

ath:AT1G73040

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.507

Rank 1 · LXL04_015734 · OH-1004

Nucleus0.481

Rank 2 · LXL04_015734 · OH-1004

Extracellular0.133

Rank 3 · LXL04_015734 · OH-1004

Endoplasmic reticulum0.069

Rank 4 · LXL04_015734 · OH-1004

Cell membrane0.068

Rank 5 · LXL04_015734 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08615.17RNase_H2_suC30-87 aa

PF01419.23Jacalin110-243 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015734	`PF08615.17`	RNase_H2_suC	30	87	2e-15	58.0
LXL04_015734	`PF01419.23`	Jacalin	110	243	1.2e-30	107.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SSM3`	Arabidopsis thaliana	Jacalin-related lectin 19	40.000%	Swiss-Prot	moderate database homology

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