LXL04_015600 | RubberDandelionOmics

Gene overview

LXL04_015600

Reference: OH-1004 Chr: Chr03 Coordinates: 77217133-77221086 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2154 bp · LXL04_015600|LXL04_015600|OH1004|cDNA

ATGCCTCAATTGCGTAGCGGAGTACGCAGAGGGAGACTGTCGAATCGACCGATTGCTGCTGAGGATACCAAACCGGAGTCAGTCAAAGAGGAAGAGAAGAAACCGATCAAGAAAGGGACGATAGTTAATAGGAAAACAGGAGAAACTAATCGGGTCGTACAGAAGAACGTAAGGGGAAGGAAGAAAGCGGTGCAGGAACCGGCGGTGGTGGGTGATGGAGACGGCGCGGAGAAGAACGCAGTAGGAACGGCGCCACAGGA...

CDS

Download CDS FASTA

2154 bp · LXL04_015600|LXL04_015600|OH1004|CDS

ATGCCTCAATTGCGTAGCGGAGTACGCAGAGGGAGACTGTCGAATCGACCGATTGCTGCTGAGGATACCAAACCGGAGTCAGTCAAAGAGGAAGAGAAGAAACCGATCAAGAAAGGGACGATAGTTAATAGGAAAACAGGAGAAACTAATCGGGTCGTACAGAAGAACGTAAGGGGAAGGAAGAAAGCGGTGCAGGAACCGGCGGTGGTGGGTGATGGAGACGGCGCGGAGAAGAACGCAGTAGGAACGGCGCCACAGGA...

Protein

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717 aa · LXL04_015600|LXL04_015600|OH1004|PROTEIN

MPQLRSGVRRGRLSNRPIAAEDTKPESVKEEEKKPIKKGTIVNRKTGETNRVVQKNVRGRKKAVQEPAVVGDGDGAEKNAVGTAPQEQNGRNEELAAGEIKKEKEQEVGEKKMDDYNSAGPSADNNLGTEEEGSTAPLPERVQVGGSPSYKIERKLGKGGFGQVYVGHRINAPVPHERTGPGAIEVALKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPRVHFKGRQGEYYIMVMDMLGPSLWDVWNNNSHTMSTEMVAC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015600`
TK1151 ID	TkA02G310630
OH-1004 ID	LXL04_015600
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_015600

Location Chr03:77217133-77221086 (+)

Description Similar to HD16: Casein kinase 1-like protein HD16

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0793500`	Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.	Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length response.2013 · DOI: 10.1111/tpj.12268

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015600 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0006897 endocytosis Biological Process

GO:0007165 signal transduction Biological Process

GO:0009740 gibberellic acid mediated signaling pathway Biological Process

GO:0009908 flower development Biological Process

GO:0010476 gibberellin mediated signaling pathway Biological Process

GO:0016055 Wnt signaling pathway Biological Process

GO:0030100 regulation of endocytosis Biological Process

GO:0045104 intermediate filament cytoskeleton organization Biological Process

GO:0048586 regulation of long-day photoperiodism, flowering Biological Process

GO:0051301 cell division Biological Process

GO:0090090 negative regulation of canonical Wnt signaling pathway Biological Process

KEGG gene cross-reference

dosa:Os03g0793500

gga:395924

hsa:122011

spo:2541341

xla:379624

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.517

Rank 1 · LXL04_015600 · OH-1004

Nucleus0.430

Rank 2 · LXL04_015600 · OH-1004

Cell membrane0.129

Rank 3 · LXL04_015600 · OH-1004

Mitochondrion0.076

Rank 4 · LXL04_015600 · OH-1004

Endoplasmic reticulum0.073

Rank 5 · LXL04_015600 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase150-384 aa

PF07714.24PK_Tyr_Ser-Thr151-315 aa

PF17667.8Pkinase_fungal256-361 aa

PF24289.2DUF7477450-717 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015600	`PF00069.32`	Pkinase	150	384	1.6e-15	57.9
LXL04_015600	`PF07714.24`	PK_Tyr_Ser-Thr	151	315	1.1e-06	28.9
LXL04_015600	`PF17667.8`	Pkinase_fungal	256	361	3.8e-08	33.2
LXL04_015600	`PF24289.2`	DUF7477	450	717	9.5e-163	540.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q852L0`	Oryza sativa subsp. japonica	Casein kinase 1-like protein HD16	66.436%	Swiss-Prot	strong database homology

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