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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_015427
Reference: OH-1004 Chr: Chr03 Coordinates: 71610722-71617367 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1917 bp · LXL04_015427|LXL04_015427|OH1004|cDNA

ATGAATCATCCTTGCAATGCAGCCATTGATAAAGAGGATGAAGGTTTAAGAGAGGAAAATAGAGAAAAAGATGGGATGATTGGATATTTACGATCGTTTATTCTCTTAAAAAAACCTAAACGTAAAAGGCCAAATTACAGTACCTTGAGTGTAAAAGATTTCAAAGGGGAGGGACCAAAATGTGAAATTCTATCACTCCAGAGTCCAATCATCCAAATTCATCTTCATAATCAAATCGACCGCTCCTACTTTTTCACTTC...

CDS

Download CDS FASTA

1917 bp · LXL04_015427|LXL04_015427|OH1004|CDS

ATGAATCATCCTTGCAATGCAGCCATTGATAAAGAGGATGAAGGTTTAAGAGAGGAAAATAGAGAAAAAGATGGGATGATTGGATATTTACGATCGTTTATTCTCTTAAAAAAACCTAAACGTAAAAGGCCAAATTACAGTACCTTGAGTGTAAAAGATTTCAAAGGGGAGGGACCAAAATGTGAAATTCTATCACTCCAGAGTCCAATCATCCAAATTCATCTTCATAATCAAATCGACCGCTCCTACTTTTTCACTTC...

Protein

Download Protein FASTA

638 aa · LXL04_015427|LXL04_015427|OH1004|PROTEIN

MNHPCNAAIDKEDEGLREENREKDGMIGYLRSFILLKKPKRKRPNYSTLSVKDFKGEGPKCEILSLQSPIIQIHLHNQIDRSYFFTSSGDGFDSELSYIDHPLIMSLRPNARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKNKREENLLKKRQVVPSSQPLSTGAPIQTATTEKKLESLPSMVAGVYSNDNNMQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_015427
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_015427
LocationChr03:71610722-71617367 (+)
DescriptionSimilar to IMPA2: Importin subunit alpha-2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g16143 Binds to conventional NLS motifs and mediates nuclear protein import across the nuclear envelope.
SWO1 modulates cell wall integrity under salt stress by interacting with importin ɑ in Arabidopsis.2021 · DOI: 10.1007/s44154-021-00010-5
At3g06720 Binds to conventional NLS motifs with high affinity in the absence of an importin beta subunit.
SWO1 modulates cell wall integrity under salt stress by interacting with importin ɑ in Arabidopsis.2021 · DOI: 10.1007/s44154-021-00010-5

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0253300 Functions in nuclear protein import. No verified direct reference in this release
Os05g0155601 Functions in nuclear protein import. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_015427 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006606 protein import into nucleus Biological Process
GO:0006607 NLS-bearing protein import into nucleus Biological Process
GO:0009651 response to salt stress Biological Process
GO:0071555 cell wall organization Biological Process
GO:2000280 regulation of root development Biological Process
GO:0005634 nucleus Cellular Component
GO:0005635 nuclear envelope Cellular Component
GO:0005730 nucleolus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009505 plant-type cell wall Cellular Component
GO:0009506 plasmodesma Cellular Component
KEGG gene cross-reference
ath:AT3G06720
ath:AT4G16143
sly:543535
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.547
Rank 1 · LXL04_015427 · OH-1004
Cytoplasm0.514
Rank 2 · LXL04_015427 · OH-1004
Cell membrane0.066
Rank 3 · LXL04_015427 · OH-1004
Mitochondrion0.057
Rank 4 · LXL04_015427 · OH-1004
Endoplasmic reticulum0.045
Rank 5 · LXL04_015427 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01749.27IBB116-200 aa
PF25579.2TPR_TRIP12_N175-296 aa
PF00514.30Arm211-251 aa
PF24768.2ARM_ARMC5214-336 aa
PF13646.13HEAT_2224-294 aa
PF30746.1TMCO6232-580 aa
PF13513.13HEAT_EZ236-291 aa
PF00514.30Arm253-292 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_015427PF01749.27IBB1162009.5e-2690.8
LXL04_015427PF25579.2TPR_TRIP12_N1752967.8e-0833.3
LXL04_015427PF00514.30Arm2112516.1e-94306.1
LXL04_015427PF24768.2ARM_ARMC52143362.4e-1970.5
LXL04_015427PF13646.13HEAT_22242942.7e-1969.9
LXL04_015427PF30746.1TMCO62325803.5e-1453.1
LXL04_015427PF13513.13HEAT_EZ2362911.9e-2795.9
LXL04_015427PF00514.30Arm2532926.1e-94306.1
LXL04_015427PF02985.29HEAT2662921.6e-1556.5
LXL04_015427PF13646.13HEAT_22703732.7e-1969.9
LXL04_015427PF00514.30Arm2953366.1e-94306.1
LXL04_015427PF13513.13HEAT_EZ3253751.9e-2795.9
LXL04_015427PF00514.30Arm3493776.1e-94306.1
LXL04_015427PF30701.1ARMC63784941.1e-0731.6
LXL04_015427PF00514.30Arm3804186.1e-94306.1
LXL04_015427PF13513.13HEAT_EZ4094601.9e-2795.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4JL11Arabidopsis thalianaImportin subunit alpha-281.599%Swiss-Protstrong database homology
Q96321Arabidopsis thalianaImportin subunit alpha-180.337%Swiss-Protstrong database homology
Q71VM4Oryza sativa subsp. japonicaImportin subunit alpha-1a82.634%Swiss-Protstrong database homology
Q9SLX0Oryza sativa subsp. japonicaImportin subunit alpha-1b78.439%Swiss-Protstrong database homology

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