LXL04_015422 | RubberDandelionOmics

Gene overview

LXL04_015422

Reference: OH-1004 Chr: Chr03 Coordinates: 71343253-71346352 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1284 bp · LXL04_015422|LXL04_015422|OH1004|cDNA

ATCATTCCAAGTTTCTCTCCATTCCCTCACATCATTTGGCTGAACAAAATGGCTGTTAATCGGAGAGATATTGCACAAATATTGGAGATGGAAAGTATCTCTACTAATCATGAGGATAACGAGTTTACCGTCTTAGCAAAGATAGTCCAACTCGATCATGGTTCTGGATGGTGTTATGCTTCATGCAGTAAATGCAACAAGAATTTGGACGCAATCGATGATTCATTTGTTTGCTCCATCTGCAATCAAGAATGTCGTTA...

CDS

Download CDS FASTA

1245 bp · LXL04_015422|LXL04_015422|OH1004|CDS

CTGAACAAAATGGCTGTTAATCGGAGAGATATTGCACAAATATTGGAGATGGAAAGTATCTCTACTAATCATGAGGATAACGAGTTTACCGTCTTAGCAAAGATAGTCCAACTCGATCATGGTTCTGGATGGTGTTATGCTTCATGCAGTAAATGCAACAAGAATTTGGACGCAATCGATGATTCATTTGTTTGCTCCATCTGCAATCAAGAATGTCGTTATCCCATCATAAGGTATAAAATACATGTGCATGTTATTGA...

Protein

Download Protein FASTA

414 aa · LXL04_015422|LXL04_015422|OH1004|PROTEIN

MNKMAVNRRDIAQILEMESISTNHEDNEFTVLAKIVQLDHGSGWCYASCSKCNKNLDAIDDSFVCSICNQECRYPIIRYKIHVHVIDESGRTTFVIFNQEAEKLLDSCANKSVNRLGVGSNQFPEEIVNLKGKIFIFKINVAPYNVNYGCENYAVIKLYDVYGRTSDFESKKKENDTPLITEEEDAFGKQMLLSIQNNKKRNTALLITDEDDAFGKQVWLSSEIVDCIYRADTSVYSAIVGKEPIQLKMKKLKSGKMWEA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015422`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_015422

Location Chr03:71343253-71346352 (+)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g61000`	Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_015422 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000724 double-strand break repair via homologous recombination Biological Process

GO:0006260 DNA replication Biological Process

GO:0006289 nucleotide-excision repair Biological Process

GO:0007004 telomere maintenance via telomerase Biological Process

GO:0051321 meiotic cell cycle Biological Process

GO:0005634 nucleus Cellular Component

GO:0005662 DNA replication factor A complex Cellular Component

GO:0003684 damaged DNA binding Molecular Function

GO:0004386 helicase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:0016787 hydrolase activity Molecular Function

KEGG gene cross-reference

ath:AT5G61000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.948

Rank 1 · LXL04_015422 · OH-1004

Cytoplasm0.117

Rank 2 · LXL04_015422 · OH-1004

Cell membrane0.020

Rank 3 · LXL04_015422 · OH-1004

Mitochondrion0.016

Rank 4 · LXL04_015422 · OH-1004

Endoplasmic reticulum0.011

Rank 5 · LXL04_015422 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08646.17Rep_fac-A_C29-142 aa

PF02721.22DUF223263-324 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015422	`PF08646.17`	Rep_fac-A_C	29	142	5.6e-14	52.9
LXL04_015422	`PF02721.22`	DUF223	263	324	1e-08	36.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FME0`	Arabidopsis thaliana	Replication protein A 70 kDa DNA-binding subunit D	29.915%	Swiss-Prot	weak database homology

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