Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2508 bp · LXL04_015409|LXL04_015409|OH1004|cDNA
ATGGGAGCGCCGGAGAAGACAACTACTTCTAACAATAATTCGATGCAGCGTGTGAAGGTATACAGACTGAATGATGACGGAAAATGGGATGATCAAGGGACAGGTCACGTCACCATTGACTATCTGGAGAGATCTGAAGAATTGGGGTTGTTTGTGATTGATGAAGAAGACAATGAAACTTTGCTTGTACATCGCATTTGCTCAGATGATATATATAGAAAACAAGAAGATACAATAATCTCATGGAGGGATCCTGAGTA...
2508 bp · LXL04_015409|LXL04_015409|OH1004|CDS
ATGGGAGCGCCGGAGAAGACAACTACTTCTAACAATAATTCGATGCAGCGTGTGAAGGTATACAGACTGAATGATGACGGAAAATGGGATGATCAAGGGACAGGTCACGTCACCATTGACTATCTGGAGAGATCTGAAGAATTGGGGTTGTTTGTGATTGATGAAGAAGACAATGAAACTTTGCTTGTACATCGCATTTGCTCAGATGATATATATAGAAAACAAGAAGATACAATAATCTCATGGAGGGATCCTGAGTA...
Protein
Download Protein FASTA835 aa · LXL04_015409|LXL04_015409|OH1004|PROTEIN
MGAPEKTTTSNNNSMQRVKVYRLNDDGKWDDQGTGHVTIDYLERSEELGLFVIDEEDNETLLVHRICSDDIYRKQEDTIISWRDPEYSSELALSFQETTGCSYIWDHVCNVQRNLHYNTISNETYHGANSELRELPEVELSTLPSILKVVVDSSITDQLCVTELILHDQKFFRKLMDLFRVCEDLENYDGLHIIYKIVRGIILLNSPQIFDKIFSDDLIMDIVGCLEYDPDVPHVHHRDILKKHVFKEAIPIKDPLASSK...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_015409 |
|---|---|
| TK1151 ID | TkA02G336550 |
| OH-1004 ID | LXL04_015409 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 97.500 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_015409 |
|---|---|
| Location | Chr03:71146296-71154607 (-) |
| Description | Similar to smek1: Serine/threonine-protein phosphatase 4 regulatory subunit 3 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006094 gluconeogenesis Biological Process GO:0006470 protein dephosphorylation Biological Process GO:0006974 DNA damage response Biological Process GO:0045722 positive regulation of gluconeogenesis Biological Process GO:2000779 regulation of double-strand break repair Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005813 centrosome Cellular Component GO:0005829 cytosol Cellular Component GO:0016607 nuclear speck Cellular Component GO:0030289 protein phosphatase 4 complex Cellular Component |
| KEGG gene cross-reference | dre:558578 hsa:55671 mmu:68734 tng:GSTEN00023117G001 xla:432127 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF22972.4EVH1_PP4R316-114 aaPF04802.23PP4R3151-643 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_015409 | PF22972.4 | EVH1_PP4R3 | 16 | 114 | 4.4e-31 | 108.1 |
| LXL04_015409 | PF04802.23 | PP4R3 | 151 | 643 | 1.1e-143 | 480.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.