Gene Card
Gene overview
cDNA / CDS / Protein Sequences
345 bp · LXL04_015404|LXL04_015404|OH1004|cDNA
ATGAGTACCATGAAGTTTTGCCGAGAATGCAACAATATTCTCTACCCTAGAGAAGATAAAGATCAGAAGACTCTCCTGTATGCTTGCCGTAACTGCGATCACCAGGAGGTTGCAGATAACTTCTGTGTGTACAGAAACGAGATCCACCATGCAGTTGGGGAGAGAACTCAGGTTTTGCAGGATGTTGCTGCTGATCCAACTCTTCCTCGCACAAAAGCTGTTCGATGTGCTCAATGTGGTCATGGAGAGGCTGTTTTCTT...
345 bp · LXL04_015404|LXL04_015404|OH1004|CDS
ATGAGTACCATGAAGTTTTGCCGAGAATGCAACAATATTCTCTACCCTAGAGAAGATAAAGATCAGAAGACTCTCCTGTATGCTTGCCGTAACTGCGATCACCAGGAGGTTGCAGATAACTTCTGTGTGTACAGAAACGAGATCCACCATGCAGTTGGGGAGAGAACTCAGGTTTTGCAGGATGTTGCTGCTGATCCAACTCTTCCTCGCACAAAAGCTGTTCGATGTGCTCAATGTGGTCATGGAGAGGCTGTTTTCTT...
Protein
Download Protein FASTA114 aa · LXL04_015404|LXL04_015404|OH1004|PROTEIN
MSTMKFCRECNNILYPREDKDQKTLLYACRNCDHQEVADNFCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCGHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_015404 |
|---|---|
| TK1151 ID | TkA02G336840 |
| OH-1004 ID | LXL04_015404 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_015404 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:71008903-71009764 (-) | |||||||||
| Description | Similar to NRPB9A: DNA-directed RNA polymerases II, IV and V subunit 9A | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0001193 maintenance of transcriptional fidelity during transcription elongation by RNA polymerase II Biological Process GO:0006283 transcription-coupled nucleotide-excision repair Biological Process GO:0006366 transcription by RNA polymerase II Biological Process GO:0006367 transcription initiation at RNA polymerase II promoter Biological Process GO:0006368 transcription elongation by RNA polymerase II Biological Process GO:0080188 gene silencing by siRNA-directed DNA methylation Biological Process GO:0000418 RNA polymerase IV complex Cellular Component GO:0000419 RNA polymerase V complex Cellular Component GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005665 RNA polymerase II, core complex Cellular Component GO:0005730 nucleolus Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT3G16980 ath:AT4G16265 bta:614472 mmu:69920 ssc:414403 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF02150.22Zn_ribbon_RPB94-38 aaPF01096.24Zn_ribbon_TFIIS75-113 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_015404 | PF02150.22 | Zn_ribbon_RPB9 | 4 | 38 | 1.3e-11 | 44.9 |
| LXL04_015404 | PF01096.24 | Zn_ribbon_TFIIS | 75 | 113 | 2.4e-12 | 47.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.