LXL04_015313 | RubberDandelionOmics

Gene overview

LXL04_015313

Reference: OH-1004 Chr: Chr03 Coordinates: 68386779-68388383 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1047 bp · LXL04_015313|LXL04_015313|OH1004|cDNA

ATGGAGAGAGAGAAGAAACCAGCTGCTTCCTCTGTGTCGGATGTTGGTGCATGGGCTATGAACATCATAAGCTCTGTTGGAATCATCATGGCCAATAAACAACTCATGTCCGCCAATGGTTACGCTTTCACATTTGCCACATCATTAACCGGATTCCACTTCGCTGTAACTGCACTGGTTGGATTCATATCAAATTCTACGGGATACACTTCATCGATGCATGTTCCTTTATGGGAACTTCTCTGGTTCTCAATTGTAGC...

CDS

Download CDS FASTA

1047 bp · LXL04_015313|LXL04_015313|OH1004|CDS

ATGGAGAGAGAGAAGAAACCAGCTGCTTCCTCTGTGTCGGATGTTGGTGCATGGGCTATGAACATCATAAGCTCTGTTGGAATCATCATGGCCAATAAACAACTCATGTCCGCCAATGGTTACGCTTTCACATTTGCCACATCATTAACCGGATTCCACTTCGCTGTAACTGCACTGGTTGGATTCATATCAAATTCTACGGGATACACTTCATCGATGCATGTTCCTTTATGGGAACTTCTCTGGTTCTCAATTGTAGC...

Protein

Download Protein FASTA

348 aa · LXL04_015313|LXL04_015313|OH1004|PROTEIN

MEREKKPAASSVSDVGAWAMNIISSVGIIMANKQLMSANGYAFTFATSLTGFHFAVTALVGFISNSTGYTSSMHVPLWELLWFSIVANTSIAAMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHNKHYSKEVKCAVVVVVIGVGVCTVTDVKINVKGFLCASVAVFATSLQQISIGSLQKKYSIGAFELLSKTAPIQAVSLLVFGPFIDYYLSANLIFDYVKTITSGAIVFILVSCSLAVFCNISQYLCIGRFSAVSFQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015313`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_015313

Location Chr03:68386779-68388383 (+)

Description Similar to URGT2: UDP-rhamnose/UDP-galactose transporter 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g21070`	Nucleotide-sugar transporter that transports UDP-rhamnose or UDP-galactose and UMP in a strict counter-exchange mode.	No verified direct reference in this release
`At1g76670`	Nucleotide-sugar transporter that transports UDP-rhamnose or UDP-galactose and UMP in a strict counter-exchange mode.	Molecular cloning of two Arabidopsis UDP-galactose transporters by complementation of a deficient Chinese hamster ovary cell line.2005 · DOI: 10.1093/glycob/cwh159
`At5g42420`	Nucleotide-sugar transporter that transports UDP-rhamnose or UDP-galactose and UMP in a strict counter-exchange mode.	No verified direct reference in this release
`At4g09810`	Nucleotide-sugar transporter that transports UDP-rhamnose or UDP-galactose and UMP in a strict counter-exchange mode.	No verified direct reference in this release
`At4g39390`	Nucleotide-sugar transporter that transports UDP-rhamnose or UDP-galactose and UMP in a strict counter-exchange mode.	Characterization of AtNST-KT1, a novel UDP-galactose transporter from Arabidopsis thaliana.2006 · DOI: 10.1016/j.febslet.2006.06.082

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015313 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009624 response to nematode Biological Process

GO:0009833 plant-type primary cell wall biogenesis Biological Process

GO:0015780 nucleotide-sugar transmembrane transport Biological Process

GO:0015783 GDP-fucose transmembrane transport Biological Process

GO:0015786 UDP-glucose transmembrane transport Biological Process

GO:0048354 mucilage biosynthetic process involved in seed coat development Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0072334 UDP-galactose transmembrane transport Biological Process

GO:1904659 D-glucose transmembrane transport Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT1G21070

ath:AT1G76670

ath:AT4G09810

ath:AT4G39390

ath:AT5G42420

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.716

Rank 1 · LXL04_015313 · OH-1004

Endoplasmic reticulum0.171

Rank 2 · LXL04_015313 · OH-1004

Cytoplasm0.116

Rank 3 · LXL04_015313 · OH-1004

Cell membrane0.052

Rank 4 · LXL04_015313 · OH-1004

Lysosome / Vacuole0.050

Rank 5 · LXL04_015313 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03151.23TPT25-301 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015313	`PF03151.23`	TPT	25	301	5.1e-17	62.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LPU2`	Arabidopsis thaliana	UDP-rhamnose/UDP-galactose transporter 2	74.352%	Swiss-Prot	strong database homology
`Q9SRE4`	Arabidopsis thaliana	UDP-rhamnose/UDP-galactose transporter 1	74.425%	Swiss-Prot	strong database homology
`Q9FIH5`	Arabidopsis thaliana	UDP-rhamnose/UDP-galactose transporter 3	72.779%	Swiss-Prot	strong database homology
`Q9SZ96`	Arabidopsis thaliana	UDP-rhamnose/UDP-galactose transporter 5	50.165%	Swiss-Prot	strong database homology
`Q8RWW7`	Arabidopsis thaliana	UDP-rhamnose/UDP-galactose transporter 4	51.042%	Swiss-Prot	strong database homology

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